Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03650 ATGGCAGATAACAAAGCCCATGACTCCGTCATGAGAAGGGTCACCTCTGTAGCCAACCACCTCATTTCCTCTCCCACTTCACCACCAGCTGATCAACTTGCCTTGTGCCACACTTCCACTTCCAGAAATGATAGCTACCAACGGGTCCATGGTAATGTTCCCTCTCAGGACGTCATTTGGAGGATTGACTCTGCCAACGACTTCACTGACATCCTTTACGAGAAAGCTGTTGGGGAAGGAATAGCCAAGATTACTATCAATAGGCCAGCGAGAAGGAATGCCTTCCGACCCCATACCGTTAAGGAGCTTATTCGTGCTTTCAATGATGCTAGGGACGATCCCTCTATTGGCGTCATCATTCTCACTGGCAAGGGAACCGAGGCATTTTGTAGTGGTGGTGACCAGGCTTTGAGGACCGAAGATGGTTATTCTGATTTTGAAAATATTGGCCGCCTTAATGTCTTAGACTTGCAGGTGCAAATCCGCCGCCTTCCAAAACCAGTAATTGCAATGGTACTCTCTTTGCAACCTTATTCTCAAACTCAATTCCTTTTCTGCTTAAAGCCTTCCACTGTGCAGACGATTTTTCTAACGTTAAAACAGGTAGCAGGTTATGCTGTTGGAGGAGGGCATGTTTTACATATGGTTTGTGATCTAACCATTGCAGCCGATAATGCCATCTTTGGTCAAACTGGTCCTAAGGTAGGAAGCTTTGACGCTGGATATGGAAGTTCTATCATGTCCCGTTTGGTAGGTCCAAAGAAAGCACGTGAAATGTGGTTTCTGACAAGGTTCTATACTGCTGTTGAAGCAGAGAAAATGGGCCTTGTCAATACTGTTGTACCAGTAAGTTCTTTATCATCTCAGGAATCTATAACACTGTAA 885 0.4531 MADNKAHDSVMRRVTSVANHLISSPTSPPADQLALCHTSTSRNDSYQRVHGNVPSQDVIWRIDSANDFTDILYEKAVGEGIAKITINRPARRNAFRPHTVKELIRAFNDARDDPSIGVIILTGKGTEAFCSGGDQALRTEDGYSDFENIGRLNVLDLQVQIRRLPKPVIAMVLSLQPYSQTQFLFCLKPSTVQTIFLTLKQVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTRFYTAVEAEKMGLVNTVVPVSSLSSQESITL. 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03650 294 SUPERFAMILY ClpP/crotonase 202 286 IPR029045 -
Seca12g03650 294 Gene3D - 52 174 - -
Seca12g03650 294 Gene3D - 199 291 - -
Seca12g03650 294 CDD crotonase-like 71 286 - -
Seca12g03650 294 SUPERFAMILY ClpP/crotonase 63 172 IPR029045 -
Seca12g03650 294 Pfam Enoyl-CoA hydratase/isomerase 79 172 IPR001753 -
Seca12g03650 294 Pfam Enoyl-CoA hydratase/isomerase 199 288 IPR001753 -
Seca12g03650 294 PANTHER NUCLEOSIDE-DIPHOSPHATE-SUGAR EPIMERASE 3 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03650 Seca-Chr12 93232495 93235137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03650 1 289 Acyl Lipid Metabolism Gene Families AT1G60550 64.865 9.11e-134 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03650 K01661 - cit:102621209 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03650 12 93232495 93235137 Seca12g03650 12 93232495 93235137 ECH