Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03616 ATGGCACTGAGCAACAACGTCATAGGAGCCATTAACTTGGTTGCTGTGCTCCTGTCAATCCCAATTATTGGTGCTGGGATCTGGCTAACAACAGAGCCAGCGGATTCTTGTGTCAAAATCGTACAATGGCCGGTCATCATCTTGGGGGTTCTGATATTGGTTGTGGCTGTGACAGGCTTCATTGGAGCCTTTTGGAGAATCCCCTCCCTTCTCATATTCTACCTGGTTGCCATGTTCGTGCTCATTGTAATGCTGATATGCTTGGCGGTTTTCATCTATGCGGTCACTCTTAGAGGGCATGGGAACATCGAACCCAATCGGTCATACTTAGAATATCATGTGGATGACTTCTCAGTTTGGCTCCGTCGAAGGGTAACAAAGTGGGATCACATCAGAAACTGTCTTCGCTCAACAACTATGTGTGCTCAGTTGAACCAAACCTACCGAGTGGCCCAGGACTTTTTTAATGCACATCTAACACCCATGCAGTCAGGGTGCTGTAAGCCACCAACCAAATGTGGTTACACGTTTGTGAACCCGACTTATTGGATTAGCCCAATCAACACGGCTGCAGATATGGATTGCATGCAATGGAGCAACGAACAAACACAACTTTGCTACAACTGTGACTCATGCAAGGCTGGTTTGTTGGCAACTCTTAGGCTGGAGTGGAGGAGGGCCAATGTAATATTGATCGTTACTTTAGTTGCTTTAATTGTAGTATATCTGATAGGGTGCTTCGCCTTTAGGAATGCCAAAACTGAGGAGCTCTTTCGCAAATACAGGCAAGGATATACTTGA 801 0.4607 MALSNNVIGAINLVAVLLSIPIIGAGIWLTTEPADSCVKIVQWPVIILGVLILVVAVTGFIGAFWRIPSLLIFYLVAMFVLIVMLICLAVFIYAVTLRGHGNIEPNRSYLEYHVDDFSVWLRRRVTKWDHIRNCLRSTTMCAQLNQTYRVAQDFFNAHLTPMQSGCCKPPTKCGYTFVNPTYWISPINTAADMDCMQWSNEQTQLCYNCDSCKAGLLATLRLEWRRANVILIVTLVALIVVYLIGCFAFRNAKTEELFRKYRQGYT. 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03616 266 Pfam Tetraspanin family 6 246 IPR018499 GO:0016020
Seca12g03616 266 PRINTS Transmembrane four family signature 38 64 - -
Seca12g03616 266 PRINTS Transmembrane four family signature 6 29 - -
Seca12g03616 266 PRINTS Transmembrane four family signature 65 93 - -
Seca12g03616 266 PANTHER TETRASPANIN-8-RELATED 1 255 IPR044991 GO:0009734|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03616 Seca-Chr12 85994891 85996639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03616 1 266 Miscellaneous Gene Families AT5G46700 66.543 4.15e-126 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03616 - - gmx:100789266 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03616 12 85994891 85996639 Seca12g03616 12 85994891 85996639 ECH
Seca12g03616 12 85994891 85996639 Seca12g03617 12 86041833 86043581 PCT