Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03592 ATGTTTAGAAATGCCAAGAAGCGTGCTCGCGATCAAAGAGCAACCCCACAACCGGACGCTTCTCCTCCTCCTCCTGACGACGACCCAGCCAATTCTCCTCGGCGGTCACCGCCACACAACCGGCCTCGTCCTCCTCCGCCTGCTGAGCATGATGACGTGGCTCAACAAATACCGAACCAAGATATGTTCGAGGCTCTTTCTCCATTGGATCCCAGTCTCACGCGTTCTGGTAAGCCTTCGATTCGGATAAGCATCCCCTCATCTCCTGAACTTGGCAGCGACTGGGCTCCTACGTCGTGGATCAACAGATACGACCCAACCTTAACTGAACCCTTCACTCCCCCATTAGCCTGTGCCTTTCCCCCCCTTTCTGATGATGAATTCACCATTCACTCAAATCTTGAGTATCGCTTGAATCTCAATTCCTTCCCTTCCTCCAACACTCAAGATAATGCTCTCCTCATACAGAATTCCTCACCTTCAGCCAAAATGGTGGGAGCTGGGGTTGCTAATCTTGGGAATACTTGTTTCATGGGTGCTATTCTTCAATGCTTTACCCACACAGTGCTACTGGTTCAGGGTCTCCGATCTTGCACTCATGGTGCACCTTGTGATGCTGATGGTCTCTGTGTTATCTGTGCTATCCGTCGACACATTAATACTTCGTTGGCAAATGCCGGAAGAGTGGTTGCTCCTACAATGCTCGTTGACAATTTGAGCTATTTTTCATCTGATTTTAAGAAACACCAACAACAGGATGCCCATGAATTTATGCAGTGTGTGTTAGATAAACTGCGAAAGTGTTTTCCAGAAGGAGAAAATAATCTGGTCCAAAAAGTATTTGGAGGTAGTCTTATCAGCAAGCTTCGATGCACTAAGTGTGGCCACTCTTCTGATACTCATGAACCACTGATTGACCTGAGTTTAGAGATAGACGAGAATGTCAATAACCTTCAGGATGCACTGGAATCTTTCACCAAGGTGGAAAAGATTGATGACAAGTTTAAATGTGCTAGCTGCAAGGAAGATGTATCCATGGAGAAGCAGCTTATGCTGAATAAAGCACCTTCAGTTGCAGCATTTCATTTGAAGAGATTTAAGAAAGATGGGATCTCACTTGAAAAGATTGCAAAATATGTTGAATTCCCATTGGAGTTGGACTTGCAGCCTTATACCTACAGTAACGGCAACGATAATGCACTCCTGAAATATGATTTATATGCAATTGTTGTACATGTTGGAACTTCACCTAATGTTGGGCATTACTTTTGCTTTGTTCGCTCTTCTCCGAACAAGTGGCACAGATTGGATGACGAACAGGTTATTAGTGTCACCGGAGATCTTGTCATGCATTATGAGGCATATATACTGTTTTATGCGCGTCAGGGAACTCCGTGGTTTTCAAGTATTATGGAAGGTGAAAATTCAGATTTAAAGATAGTTTATGGTGATGAAAAAATGGGTGATCATTATGATTCTGAGGAGGCTGGGTGTGTTAGTGACAGCAGAGTTCATGAAATCTATCATGATTGTCCTTGA 1539 0.4438 MFRNAKKRARDQRATPQPDASPPPPDDDPANSPRRSPPHNRPRPPPPAEHDDVAQQIPNQDMFEALSPLDPSLTRSGKPSIRISIPSSPELGSDWAPTSWINRYDPTLTEPFTPPLACAFPPLSDDEFTIHSNLEYRLNLNSFPSSNTQDNALLIQNSSPSAKMVGAGVANLGNTCFMGAILQCFTHTVLLVQGLRSCTHGAPCDADGLCVICAIRRHINTSLANAGRVVAPTMLVDNLSYFSSDFKKHQQQDAHEFMQCVLDKLRKCFPEGENNLVQKVFGGSLISKLRCTKCGHSSDTHEPLIDLSLEIDENVNNLQDALESFTKVEKIDDKFKCASCKEDVSMEKQLMLNKAPSVAAFHLKRFKKDGISLEKIAKYVEFPLELDLQPYTYSNGNDNALLKYDLYAIVVHVGTSPNVGHYFCFVRSSPNKWHRLDDEQVISVTGDLVMHYEAYILFYARQGTPWFSSIMEGENSDLKIVYGDEKMGDHYDSEEAGCVSDSRVHEIYHDCP. 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03592 512 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 125 462 - -
Seca12g03592 512 MobiDBLite consensus disorder prediction 1 53 - -
Seca12g03592 512 MobiDBLite consensus disorder prediction 17 43 - -
Seca12g03592 512 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 167 462 IPR028889 -
Seca12g03592 512 MobiDBLite consensus disorder prediction 67 96 - -
Seca12g03592 512 FunFam Ubiquitin carboxyl-terminal hydrolase 20 163 465 - -
Seca12g03592 512 MobiDBLite consensus disorder prediction 73 96 - -
Seca12g03592 512 Pfam Ubiquitin carboxyl-terminal hydrolase 168 459 IPR001394 GO:0004843|GO:0016579
Seca12g03592 512 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 404 422 IPR018200 GO:0004843|GO:0006511
Seca12g03592 512 Gene3D Cysteine proteinases 162 463 - -
Seca12g03592 512 SUPERFAMILY Cysteine proteinases 167 461 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03592 Seca-Chr12 84767621 84770362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03592 168 501 Miscellaneous Gene Families AT4G31670 31.909 1.31e-50 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03592 K11855 - zju:107430532 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03592 12 84767621 84770362 Seca12g03592 12 84767621 84770362 ECH