Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03525 ATGAAGAATCTGTCCACACAGGATCTTGAACAACTTGCAGTTGAGGTAAGGGCAGACATTGTACACACTGTATCAAACACTGGTGGGCATCTTAGCTCAAGCTTGGGAGTGGTGGAGTTAGCAGTGGCTCTGCATCATGTTTTCAACACCCCTGAAGACAAGATTATATGGGATGTTGGCCATCAGGCATATCCACACAAGATTCTAACAGGTAGAAGGTCCAGGATGCACACCATTAGAAAGACTTCAGGGCTAGCAGGTTTTCCTAAAAGGGATGAGAGCGTTCATGATGCTTTTGGTGCAGGGCACAGTTCTACAAGTATATCTGCCGGCCTTGGCATGGCAGTTGCACGGGATCTATTGAAGAAGAACAACAGTGTGATTTCAGTGATTGGAGATGGGGCAATGACTGCAGGCCAAGCTTATGAGGCTATGAACAATGCAGGATTCCTTGATGCTAATTTGATTGTTGTACTTAATGACAACAAGCAAGTCTCTTTACCAACTGCCACACTTGATGGCCCTGCAACTCCAGTTGGAGCCCTCAGTAGTACTTTAAGCAAAATTCAAGCAAGCACCCAATTCCGGAAACTTAGAGAAGCTGCAAAAACCATAACAAAGCAAATAGGAGGACCAACACACCAAGTTGCTGCAAAAGTAGATGAGTATGCAAGAGGTATGATCAGTGGTTCTGGTTCCACATTCTTTGAGGAGCTTGGGTTATACTACATTGGCCCTGTGGATGGTCATAACATTGAAGATCTGGTGACCATTTTTGAAAAAGTGAAAGCAATGCCTGCCCCAGGTCCAGTTTTGATTCATGTTGTGACAGAAAAAGGAAAGGGATACCCCCCAGCTGAAGCAGCAGCTGATAAAATGCATGGTGTTGTCAAGTTTGATCCAAAAACAGGCCACCAGTTTAAGTCAAAATCCTCTACACTTTCATACACCCGGTACTTTGCTGAATCTTTGATAAAGGAAGCTGAAATAGACAACAAGATAGTAGCCATTCACGCAGCAATGGGTGGTGGAACTGGCCTAAATTATTTCCAGAAAAGGTTTCCAGAACGCTGTTTTGATGTGGGGATAGCTGAACAACATGCTGTTACATTTGCAGCTGGTTTAGCTGCTGAAGGCCTCAAGCCATTTTGTGCTATTTATTCATCCTTCCTTCAACGTGGATATGACCAGGTAGTCCATGATGTTGATCTTCAAAAACTACCTGTCCGATTTGCTATGGATAGAGCTGGTTTGGTTGGTGCAGATGGACCAACCCATTGTGGAGCATTTGATATCACTTACATGGCTTGCTTGCCCAACATGGTGGTCATGGCTCCATCTGATGAAGCTGAACTGATGCACATGGTTGCAACCGCAGCAGCTATAGATGACAGACCAAGTTGCTTTAGATTTCCAAGGGGCAATGGAATTGGAGCCATTCTGCCCCTCAATAACAAAGGAACCCCACTTGAGATAGGAAAAGGCAGAATTCTTATTGAAGGTAGCAGAGTTGCTGTATTGGGATATGGTTCTATAGTTCAACAATGCAAGCAAGCTGCAGAGATCCTTAAAACACTAGGTGTTTATGTGACAGTTGCTGATGCTAGATTTTGCAAACCTTTGGATACTGATCTCATTAAACTACTAGCTAAAGAGCATGAAATACTCATCACAGTGGAAGAAGGTTCTATTGGAGGTTTTGGATCACATGTTTCACAATTCTTAAGCTTAGCTGGTATCCTGGATGGACCTCTAAAGTGGAGAGCAATGATGCTTCCTGATAGGTACATTGAGCATGGATCACCCCAAGATCAAACTGAAGAAGCAGGTCTTTCATCAAAGCATATTGCCGCCACAGTCTTGTCTCTTATTGAAAGGCCAAACGAAGCTCTTCTGTTCAAATAA 1905 0.4367 MKNLSTQDLEQLAVEVRADIVHTVSNTGGHLSSSLGVVELAVALHHVFNTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGLAGFPKRDESVHDAFGAGHSSTSISAGLGMAVARDLLKKNNSVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSTLSKIQASTQFRKLREAAKTITKQIGGPTHQVAAKVDEYARGMISGSGSTFFEELGLYYIGPVDGHNIEDLVTIFEKVKAMPAPGPVLIHVVTEKGKGYPPAEAAADKMHGVVKFDPKTGHQFKSKSSTLSYTRYFAESLIKEAEIDNKIVAIHAAMGGGTGLNYFQKRFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELMHMVATAAAIDDRPSCFRFPRGNGIGAILPLNNKGTPLEIGKGRILIEGSRVAVLGYGSIVQQCKQAAEILKTLGVYVTVADARFCKPLDTDLIKLLAKEHEILITVEEGSIGGFGSHVSQFLSLAGILDGPLKWRAMMLPDRYIEHGSPQDQTEEAGLSSKHIAATVLSLIERPNEALLFK. 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03525 634 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 2 623 IPR005477 GO:0008661|GO:0016114
Seca12g03525 634 ProSitePatterns Transketolase signature 2. 420 436 IPR020826 -
Seca12g03525 634 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 1 625 IPR005477 GO:0008661|GO:0016114
Seca12g03525 634 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 1 277 IPR005477 GO:0008661|GO:0016114
Seca12g03525 634 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 493 625 - -
Seca12g03525 634 Pfam Transketolase, C-terminal domain 493 616 IPR033248 -
Seca12g03525 634 SMART Transket_pyr_3 314 479 IPR005475 -
Seca12g03525 634 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 313 481 - -
Seca12g03525 634 CDD TPP_DXS 28 283 IPR005477 GO:0008661|GO:0016114
Seca12g03525 634 Pfam Transketolase, pyrimidine binding domain 314 475 IPR005475 -
Seca12g03525 634 SUPERFAMILY TK C-terminal domain-like 488 624 IPR009014 GO:0003824
Seca12g03525 634 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 286 475 IPR029061 -
Seca12g03525 634 CDD TPP_PYR_DXS_TK_like 320 473 - -
Seca12g03525 634 Gene3D - 493 624 IPR009014 GO:0003824
Seca12g03525 634 Gene3D - 314 480 - -
Seca12g03525 634 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 4 357 IPR029061 -
Seca12g03525 634 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 631 IPR005477 GO:0008661|GO:0016114
Seca12g03525 634 Gene3D - 1 286 - -
Seca12g03525 634 ProSitePatterns Transketolase signature 1. 17 36 IPR005474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03525 Seca-Chr12 80784363 80788217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03525 357 572 Acyl Lipid Metabolism Gene Families AT3G13450 21.681 8.65e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03525 K01662 - gmx:100798930 1184.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03525 12 80784363 80788217 Seca12g03525 12 80784363 80788217 ECH