Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03383 ATGGTAATAGTTGCATTATCTTCCTCTCTCCCTGGGGGGAGAAACCTCTTCTCCTCCTTACCTTCCACGCCACCTCCTTCCTCCTCCTCCTCCTCCTCCTCCGCCTCCACCCCTCCGCCACCAATCCCAATCCCCAAATACCCCCCGCCCCGAAAATCCAAAAACCCACCACCACCACCACCGCCACCGAACCCGGGCCTCAAATACCACCGCAACTCCAGCTACCACAAGCCCGTGAAAGACGGCGGCGTCATCGCCTCGGACGGCGAGCGCTCCGTAATTGTCGGGGAGTCCGGCGTCTCATACCTCCTCCCTGGCGCCCCCTTCGAGTTCCAGTTCAGCTACTCGGAGACTCCTAAGGTGAAGCCTCTGGCGATTCGCGAACCGGCGTTCCTTCCTTTCGCTCCGCCCACGATGCCGAGGCCGTGGACCGGAAAGGCACCGTTGAAAAGCTCGAAGAAGAAGGTTCCGCTGTTCGACTCATTCAATCCTCCTCCTCCTGGCATGAAGGGAGTGAAGCGCGTTGAAATGCCGGGACCCTTTCCGATGGGGAAGTATCCAGAGCAAGGGAAGACTAGGGAAGAGATACTTGGGGACCCTCTCAAGCGTTGGGAGATACGAATGCTTGTTAAGCCCATGCTTTCTGATAATCGCCAGGTTAATCTCGGTCTAGGAAGGGATGGATTAACACATAACATGTTGGAGTTGATACATACACATTGGAAACGTCGCCGTGTCTGTAAAGTTCGTTGTAAAGGTGTTCCCACTGTAGATATGGACAATGTTTGCCGTCATATTGAGGTATCCTTTTTCAATTTTCTTTTACATAGATTCGAGAAAACTGGGGGTAAAATAATTCATCGAGTTGGTGGTGTATTATATCTTTTCCGTGGAAGAAATTACAACTATAGTACTCGTCCACAGTATCCAGTGATGCTCTGGAAGCCAGCTGCTCCTGTTTACCCAAAACTCATACAGGATGCTCCAGGAGGATTAACAAAAGCTGAAGCTGATGAATTACGGATGAAAGGGAAAAACCTGTTGCCAATATGTAAATTAGCTAAAAATGGAGTATACATCTCTCTTGTAAAGGATGTCAGAGATGCTTTTGAAGGAAGTCCTTTGGTGAAGATTGACTGCAAGGGATTGGATCCTAGTGATTACAAGAAATTAGGTGCCAAGCTTAAGGATTTGGTTCCTTGTGTGCTGTTGTCTTTCGATGATGAACAGATATTGATGTGGAGGGGCAAAGACTGGAAATCAAGGTACCCACAAGCTCCACCAGTTTTTACTCCTGCTGAAGCTGGCATTACAAGGAATTTGGACAATAGAGGTGAGGGTGATGATAATCAATCCAATCATGAAGGCAACATGGTGAACACAAGCCCAAAAATGATGTCTCTGTGGAGGAGTGCAATTGAGTCAAGCAAAGCTTTGTTGCTGGAAGAATTTGATCTTGGTCCTGATGCTCTCTTGGAGAAGGTAGAGGAATTTGAGGGCATATCACAGGCCACGGAACACTCCTATCCAGCATTTATCACGTCAAGTGAAGATGGCGATGAAGGTTCAATTGCAGACTTTGAAGATGGTATAGAAGACAGGTATTCAAGTGATGGCTTGCCTAGTAGTGAGGAGGAGGAGGAGGATGAATATGATGATTATGATAACTACCATGATGATGAAGATGATGACTTGCACGATATAGTGGACACATCAGCTCAACCCGGATCATTACCTGTTGATTCGATTGTCAAAGAGCTGAAACCAAGACAAGAGAAGTAA 1782 0.4776 MVIVALSSSLPGGRNLFSSLPSTPPPSSSSSSSSASTPPPPIPIPKYPPPRKSKNPPPPPPPPNPGLKYHRNSSYHKPVKDGGVIASDGERSVIVGESGVSYLLPGAPFEFQFSYSETPKVKPLAIREPAFLPFAPPTMPRPWTGKAPLKSSKKKVPLFDSFNPPPPGMKGVKRVEMPGPFPMGKYPEQGKTREEILGDPLKRWEIRMLVKPMLSDNRQVNLGLGRDGLTHNMLELIHTHWKRRRVCKVRCKGVPTVDMDNVCRHIEVSFFNFLLHRFEKTGGKIIHRVGGVLYLFRGRNYNYSTRPQYPVMLWKPAAPVYPKLIQDAPGGLTKAEADELRMKGKNLLPICKLAKNGVYISLVKDVRDAFEGSPLVKIDCKGLDPSDYKKLGAKLKDLVPCVLLSFDDEQILMWRGKDWKSRYPQAPPVFTPAEAGITRNLDNRGEGDDNQSNHEGNMVNTSPKMMSLWRSAIESSKALLLEEFDLGPDALLEKVEEFEGISQATEHSYPAFITSSEDGDEGSIADFEDGIEDRYSSDGLPSSEEEEEDEYDDYDNYHDDEDDDLHDIVDTSAQPGSLPVDSIVKELKPRQEK. 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03383 593 MobiDBLite consensus disorder prediction 542 567 - -
Seca12g03383 593 MobiDBLite consensus disorder prediction 1 84 - -
Seca12g03383 593 Pfam CRS1 / YhbY (CRM) domain 332 415 IPR001890 GO:0003723
Seca12g03383 593 Pfam CRS1 / YhbY (CRM) domain 222 297 IPR001890 GO:0003723
Seca12g03383 593 SUPERFAMILY YhbY-like 332 423 IPR035920 -
Seca12g03383 593 ProSiteProfiles CRM domain profile. 199 308 IPR001890 GO:0003723
Seca12g03383 593 MobiDBLite consensus disorder prediction 11 35 - -
Seca12g03383 593 SMART CRS1_YhbY_2 201 297 IPR001890 GO:0003723
Seca12g03383 593 SMART CRS1_YhbY_2 332 415 IPR001890 GO:0003723
Seca12g03383 593 Gene3D - 332 426 IPR035920 -
Seca12g03383 593 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 30 587 IPR044599 GO:0000373
Seca12g03383 593 SUPERFAMILY YhbY-like 201 306 IPR035920 -
Seca12g03383 593 ProSiteProfiles CRM domain profile. 330 426 IPR001890 GO:0003723
Seca12g03383 593 FunFam CRS2-associated factor 1, chloroplastic 331 426 - -
Seca12g03383 593 Gene3D - 201 309 IPR035920 -
Seca12g03383 593 MobiDBLite consensus disorder prediction 36 67 - -
Seca12g03383 593 MobiDBLite consensus disorder prediction 430 461 - -
Seca12g03383 593 MobiDBLite consensus disorder prediction 513 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03383 Seca-Chr12 72438459 72444796 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03383 - - gmx:100801953 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03383 12 72438459 72444796 Seca12g03383 12 72438459 72444796 ECH