Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03244 ATGAGGGAGTTCAACGGTGCTGAGTATGTGACTGTTGGTGAGTTACCTTCCCCAAGGGAAAATCATATGAAGAGAGTTTCTGTTCTTCATCTGGTATTTCTCATCTTCTATGAGGTTTCTGGGGGACCCTTTGGTGTTGAGGATACTGTGAAGGCAGCAGGTCCTCTATTAGCCCTTTTGGGGTTTTTGGTTTTTCCATTCATATGGAGTGTTCCTGAGGCTCTGATTACTGCAGAGATGGGTACCATGTTCCCTGAGAACAGTGGTTATGTGGTTTGGGTTTCCTCTGCTTTGGGTCCCTATTGGGGGTTTCAGCAAGGTTGGATGAAATGGCTAAGTGGGGTGATTGATAATGCTTTGTACCCAGTCATGTTTCTTGACTATCTGAAATCTGGAATCCCTGCTTTAGGTGGTGGAGTTCCCAGAACTGTTTCAATTTGGGGTTTGACTATAATTCTCACTTACTTGAACTACAGGGGTTTAACTATTGTGGGATTGGTTGCTGTTCTTTTAGGGGTTTTCTCACTCCTTCCTTTTGTGGCTATGGGACTCTTGTCAATTCCAGACTTGAAACCTTCCAGATGGTATGTGACAACAAATCTAGATGATGTTGATTGGAATCTGTATTTGAACACTCTATTTTGGAATCTAAATTATTGGGATTCCATTAGTACTCTTGCTGGAGAAGTGGAAAATCCAAGGAAAAATCTTCCAAAGGCTCTCTTTTATGCTTTGATCCTAGTAGTTGTAGGGTATTTCTTTCCTCTTCTCATTGGCACTGGTGTTGTTCCACTCAATAGGGAGTTGTGGACAGATGGTTACTTCTCAGATATTGCTAAGATTGTTGGAGGAGTGTGGTTGAGATGGTGGCTTCAAGCTGCTGCTGCAATGTCAAACATGGGAATGTTTGTTGCTGAAATGAGCAGTGACTCCTTCCAGCTTCTAGGGATGGCTGAGAGGGGAATGTTACCTGAGTTCTTTGGCAAGAGGTCTCACTATGGAACCCCTCTTATAGGAATACTCTTTTCAGCCTCTGGTGTAATCTTACTATCATGGCTTAACTTTCAAGAAATTGTAGCTGCTGAAAATTTCTTGTACTGTTTTGGCATGATTTTGGAGTTTGCTGCATTTATATTGTTGAGGATCAAACACCCCACTGCTTCTAGGCCTTACAAGATACCAGGGGGAACATTTGGAGCAATTCTTATGTGCATTCCTCCCACAATATTTATTTGTGTAGTGCTGGCTTTCTCCTCCCTGAAAGTAATGGCTATAAGCCTCATTGCTGTGGTGATTGGCCTTGTAATGCAACCTTGTCTTAGATTTCTGGAGAAAAAGAGATGGATGAAGTTCTCAGTTAGTTCTGAGCTCTCAGATCTTGACAATGAGGAGAGCATTCACTCTTTGGTGGATTGA 1416 0.4244 MREFNGAEYVTVGELPSPRENHMKRVSVLHLVFLIFYEVSGGPFGVEDTVKAAGPLLALLGFLVFPFIWSVPEALITAEMGTMFPENSGYVVWVSSALGPYWGFQQGWMKWLSGVIDNALYPVMFLDYLKSGIPALGGGVPRTVSIWGLTIILTYLNYRGLTIVGLVAVLLGVFSLLPFVAMGLLSIPDLKPSRWYVTTNLDDVDWNLYLNTLFWNLNYWDSISTLAGEVENPRKNLPKALFYALILVVVGYFFPLLIGTGVVPLNRELWTDGYFSDIAKIVGGVWLRWWLQAAAAMSNMGMFVAEMSSDSFQLLGMAERGMLPEFFGKRSHYGTPLIGILFSASGVILLSWLNFQEIVAAENFLYCFGMILEFAAFILLRIKHPTASRPYKIPGGTFGAILMCIPPTIFICVVLAFSSLKVMAISLIAVVIGLVMQPCLRFLEKKRWMKFSVSSELSDLDNEESIHSLVD. 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03244 471 PIRSF AA_transporter 10 469 - -
Seca12g03244 471 Gene3D Amino acid/polyamine transporter I 21 456 - -
Seca12g03244 471 FunFam Amino acid permease, putative 22 452 - -
Seca12g03244 471 Pfam Amino acid permease 30 431 IPR002293 GO:0016020|GO:0022857|GO:0055085
Seca12g03244 471 PANTHER POLYAMINE TRANSPORTER PUT1 19 463 IPR044566 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03244 Seca-Chr12 66372484 66373899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03244 3 463 Organic Solute Cotransporters AT1G31830 74.464 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03244 - - gmx:100810822 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03244 12 66372484 66373899 Seca12g03244 12 66372484 66373899 ECH