Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03134 ATGAGGATTTTCCCAAACAAGTTCTTCACCAAAGCCCGCAATCTAATAGGCATCGGACTCGCTTCCTCCACTTCCGCCGCCATCGTTGCCGCTTCATCTTCTTCTTCAACTTCAACTTCTTCCTCCGTCGCCACTTCCACATCTTCTTCCGACTCCAGCGACTCTTCCTACTATTCTTCTGATGACGCTGCAATGGATGACCGGAAGCTACTGAAAACGAAGCTCTGCATCATCGGAAGCGGTCCGGCAGCTCACACGGCCGCCATTTACGCTGCCCGCGCCGAGCTGAAGCCAATCCTCTTCGAAGGCTGGATGGCCAACGACATTGCCCCCGGCGGTCAGCTCACCACCACCACCGACGTCGAGAACTTCCCGGGATTCCCCGACGGCATCCTCGGCGCTGAACTCATGGACCGTTGCCGGCGACAGTCGCAGCGTTTCGGCACTGAGATCATCACAGAGACGGTGTCCAAGGTGGACTTTTCCAAGCGGCCGTTTAAGGTCATCACTGATTCCACCACCGTGGAGGCAGAATCCGTCGTCGTCGCCACTGGTGCGGTCGCGAAGCGGCTGAAATTCGATGGCTCCGGTGACAGTCCGGACGGATTCTGGAACCGCGGGATATCGGCGTGCGCAGTGTGCGACGGTGCTGCTCCCATATTCCGCGACAGGCCGCTGGCGGTGATCGGCGGCGGGGATTCGGCTATGGAGGAAGCCAACTTTCTCACCAAGTTTGGTTCCAAGGTGTACATAATTCATAGGAGGGATAAGTTTAGGGCTTCTAAGATCATGCAGGGGAAGGTGATGAGAAATCCCAAGGTTGAGGTATTGTGGAATTCAGTGGTGGTTGGAGCATATGGGGATGAAAAGGGGAGAGTTCTTGGGGGACTCAAGGTGAAGAATTTGGTGACTGGGGATGTGTTTGATTTGAAGGTGTCTGGTTTGTTCTTTGCAATTGGTCATGAGCCTGCCACAAAGTTCTTGGATGGTCAACTTGAACTGGATTCTGATGGCTACATCGTGACCAAGCCAGGTACCACAATGACCAGTGTTGAGGGAGTTTTTGCTGCTGGTGATGTCCAGGACAAGAAGTATAGGCAAGCTGTTACGGCTGCTGGCACTGGTGGTGTATGGCAGCCTTGGAAGCAGAACATTACTTGCAAGGGATTGGTTTGCAACAGGGTAAGAGTGATTGACTTGCTAGGTTATCCCTGGAGTTCACAAGATGCTTCATTAGAAGAAATGTGTAATTTATATATGGTAGTAAAAAAGCTCTTTCTGCACCCGGTAACATCTTAA 1299 0.5258 MRIFPNKFFTKARNLIGIGLASSTSAAIVAASSSSSTSTSSSVATSTSSSDSSDSSYYSSDDAAMDDRKLLKTKLCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTTDVENFPGFPDGILGAELMDRCRRQSQRFGTEIITETVSKVDFSKRPFKVITDSTTVEAESVVVATGAVAKRLKFDGSGDSPDGFWNRGISACAVCDGAAPIFRDRPLAVIGGGDSAMEEANFLTKFGSKVYIIHRRDKFRASKIMQGKVMRNPKVEVLWNSVVVGAYGDEKGRVLGGLKVKNLVTGDVFDLKVSGLFFAIGHEPATKFLDGQLELDSDGYIVTKPGTTMTSVEGVFAAGDVQDKKYRQAVTAAGTGGVWQPWKQNITCKGLVCNRVRVIDLLGYPWSSQDASLEEMCNLYMVVKKLFLHPVTS. 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03134 432 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-II active site. 211 233 IPR008255 GO:0016491
Seca12g03134 432 MobiDBLite consensus disorder prediction 36 59 - -
Seca12g03134 432 Gene3D - 77 375 IPR036188 -
Seca12g03134 432 PANTHER THIOREDOXIN REDUCTASE 1-RELATED-RELATED 73 374 - -
Seca12g03134 432 FunFam Thioredoxin reductase 198 324 - -
Seca12g03134 432 Pfam Pyridine nucleotide-disulphide oxidoreductase 74 375 IPR023753 GO:0016491
Seca12g03134 432 Gene3D - 193 324 IPR036188 -
Seca12g03134 432 PRINTS Pyridine nucleotide disulphide reductase class-II signature 204 216 - -
Seca12g03134 432 PRINTS Pyridine nucleotide disulphide reductase class-II signature 349 367 - -
Seca12g03134 432 PRINTS Pyridine nucleotide disulphide reductase class-II signature 133 143 - -
Seca12g03134 432 PRINTS Pyridine nucleotide disulphide reductase class-II signature 314 335 - -
Seca12g03134 432 PRINTS Pyridine nucleotide disulphide reductase class-II signature 178 186 - -
Seca12g03134 432 PRINTS Pyridine nucleotide disulphide reductase class-II signature 112 127 - -
Seca12g03134 432 PRINTS Pyridine nucleotide disulphide reductase class-II signature 74 96 - -
Seca12g03134 432 PRINTS Pyridine nucleotide disulphide reductase class-II signature 221 245 - -
Seca12g03134 432 PRINTS Pyridine nucleotide disulphide reductase class-II signature 273 289 - -
Seca12g03134 432 PRINTS FAD-dependent pyridine nucleotide reductase signature 225 243 - -
Seca12g03134 432 PRINTS FAD-dependent pyridine nucleotide reductase signature 339 361 - -
Seca12g03134 432 PRINTS FAD-dependent pyridine nucleotide reductase signature 312 328 - -
Seca12g03134 432 PRINTS FAD-dependent pyridine nucleotide reductase signature 75 94 - -
Seca12g03134 432 PRINTS FAD-dependent pyridine nucleotide reductase signature 177 195 - -
Seca12g03134 432 SUPERFAMILY FAD/NAD(P)-binding domain 72 375 IPR036188 -
Seca12g03134 432 NCBIfam thioredoxin-disulfide reductase 74 376 IPR005982 GO:0004791|GO:0005737|GO:0019430
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03134 Seca-Chr12 62294696 62299771 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03134 K00384 - gmx:100794363 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03134 12 62294696 62299771 Seca12g03134 12 62294696 62299771 ECH
Seca12g03134 12 62294696 62299771 Seca12g03134 12 62294696 62299771 PCT