Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03083 ATGGTTCAGATGAAATACACTATACCCCTCTCTGCTTCTTATGGGAATTCTGAAGTGTCTGATGATACTGCTGTGACCCATATACTGCCTCAACCGGCAGCGGAAAGTAAGAGGGTTCTCATAATATTTAGAAATGGCCAAATAATATTATGGGATATTCAGGAAAGCAGAACTGTTTTCAGAACTGGTGGAAATATGTTGCAACCAGTGCACAATGAAGCAAAGAAAGTGACTTCTGCATGTTGGGCATGTCCTTTTGGAAGTAAAGTGGTTGTTGGGTACAACAATGGAGAGCTCTTCATTTGGAGCATCCCTTCTCTAACTATGGGAAATGGTTCTGCCTCTGATTATAGTAGTCAGAACACTCCTTTGCTCAAACTTAACTTAGGATATAAGTCAGAGAACATTTCCATTGGATCAACAAAATGGGTTTATACTGGAGGAAAGGCTAGTCGACTATATGTCATGGGAGCTTCTGACTATGCAAGTTCAAACTTGCTGCAGGTAGTGTTGTTGAATGAGCATACTGAATCTCGCACAATTAAGTTGGGACTTCATTTGTCTGAATGTTGTATTGACATGGAGATTATATCAACTTCAACTGAGCTAGGCAAGCATAAACAAGATTATTTCCTTTTGCTTGGGAAGTCAGGCCATGTATATCTGTATGATGATAGTTTGATTGAAAGGTATCTGCTACAATGCCAGTCTAAATCCACGCCTTCACTTCCAAAGGAAGTGGTTGTGAAGTTACCATTGGCAGATTCAAGCATCACAACAGCAAAATTCGTCTCCAACAATCCCAATGTGTTCAATTCTGAAGATGAGTATTTCAGACAGCTGGCCAAGAATTATCCACTTTTTGTTCCTGTTGAAACAAATCAAAAAGATGGGGTTAGCCTGAGTTCTGCCAAATTTACTGGATTTTCAAAAGTTCAAAACTTGTACATAACTGGACACAGCAATGGAGCCATAAACTTCTGGGATGCTTCATGTCCCTTTTTCACCCCCATTTTGCAATTAAAACAACAGAGTGAAAATGACTTTTCATTAAGTGGTATTCCCTTGACGACATTATACTTTGATAGCAACTCTCCTCTTCTTGTTTCTGGTGACCAAAGTGGAACGGTTCGCATCTTTCGATTCAAACCTGAACCATATGCCACCAACAGCTTCATGTCTTTCACTGGAGGTACAAAGAAAGGGACTGACCATATAATACAAAGTGTGAAGCTTGTAAAGATTAATGGTGCCATACTTTCTATGAACATAGATCATAGCTCGATGCATCTTGCTGTTGGTTCTGATCAAGGACATGTTTCAGTTTTTAACATGGATGGCCCAACTTTGTTATATCAGAAACATATTGCAAGTGAAATTTCTGCTGGCATCATCTCTCTGCAGTTCCTAACCTGCAGTTTGCATGGTTTTGAAAAAAACATTTTAGCAGTTGGAACAAAAGATTCATCAGTTCTCGCACTTGATAATGAAACTGGTAACACGCTGACCGTTGGAACAGTTCATCCTAAGAAGCCCTCTAAAGCTCTATTTATGCAGGTGTTGGATGGACAAGGTGAACCAATCACAGGATCAATTACGAAAAATGAATTAGACTTGAACGAAGGGAATCATATTGAGGATGCAACAACAAAGCAATTGTACATACTGCTTTGTTCAGAGAAAGCTTTATATGTCTATTCATTGATGCATGCTGTTCAGGGGGTTAAAAAGGTGCTTTACAAGAAGAAGTTTCATTCCTCTTCCTGTTGCTGGGCATCAACGTTTTACAGCCCCTCTGATATTGGCCTTATACTCCTTTTCAATAGTGGAAAAGTAGAATTAAGGTCTTTGCCAGAGTTATCCCTTGTTGTGGAGACTTCAATTAGAGGTTTCTCTTATTCACCTCCAAAATCGAAGTTGTCATCTGATAGCCTCATATGTTGTTCATCCAGAGGAGATCTTGTTTTGGTGAATGGTGACCGAGAAATTTTTATTGTCTCATTGTTGGTTCAAAGGAATATTTTCAGGATTTTGGACTCTGTTAGCTGCATCTACAGGAAAGAAATGATGCTGTCACAAGAAGAGCTTGTCTCTGGCCCAGTCATCCATAAAGAAAGGAAAAAGGGTATATTCAGCTCTGTTATCAAAGATTTTACTGGCAGTAAAGAAAAAAATGCGCCCCCCGTGGAAACAGAAAATTCTAAAGAAAGTATCCAAGAACTCTCAGTAATATTTGCAAATGAAAACTTTCCATGTGATGCTGATAATAATGATAACCAGGCTGTTGACGAAGATGAGCTTGAACTAAACATAGATGACATTGACATAGATGATATTGAGGAAAAGCCTAAAGAACAAAAGATATTGGGAGCTCTTAATAAGAAGAAATTGGCTGGAAAATTTCAGGCTCTAAAAGGAAGATTGAAGGAGATGAAGGGAAACATCCAGAAAACATCAGGTAAGGAAGAGCAACAAGATGAACAAGTAGGTGCAGTCGATCAAATTAAAAAGAAATACGGGTTTTCTTCTTCCTCCAATGACACAAGCACTGCTAAATTGGCAGAAAGCAAGCTGCAGGAGAACTTGAAAAAATTGCAGGGTATCAACCTTCGAACTACAGAAATGCAAGATACAGCAAAATCATTTTCATCATTGGCAAATCAAGTGCTACGAACTGCTGAACAGCAACAGGACAGACGAAGTTCATAA 2709 0.3898 MVQMKYTIPLSASYGNSEVSDDTAVTHILPQPAAESKRVLIIFRNGQIILWDIQESRTVFRTGGNMLQPVHNEAKKVTSACWACPFGSKVVVGYNNGELFIWSIPSLTMGNGSASDYSSQNTPLLKLNLGYKSENISIGSTKWVYTGGKASRLYVMGASDYASSNLLQVVLLNEHTESRTIKLGLHLSECCIDMEIISTSTELGKHKQDYFLLLGKSGHVYLYDDSLIERYLLQCQSKSTPSLPKEVVVKLPLADSSITTAKFVSNNPNVFNSEDEYFRQLAKNYPLFVPVETNQKDGVSLSSAKFTGFSKVQNLYITGHSNGAINFWDASCPFFTPILQLKQQSENDFSLSGIPLTTLYFDSNSPLLVSGDQSGTVRIFRFKPEPYATNSFMSFTGGTKKGTDHIIQSVKLVKINGAILSMNIDHSSMHLAVGSDQGHVSVFNMDGPTLLYQKHIASEISAGIISLQFLTCSLHGFEKNILAVGTKDSSVLALDNETGNTLTVGTVHPKKPSKALFMQVLDGQGEPITGSITKNELDLNEGNHIEDATTKQLYILLCSEKALYVYSLMHAVQGVKKVLYKKKFHSSSCCWASTFYSPSDIGLILLFNSGKVELRSLPELSLVVETSIRGFSYSPPKSKLSSDSLICCSSRGDLVLVNGDREIFIVSLLVQRNIFRILDSVSCIYRKEMMLSQEELVSGPVIHKERKKGIFSSVIKDFTGSKEKNAPPVETENSKESIQELSVIFANENFPCDADNNDNQAVDEDELELNIDDIDIDDIEEKPKEQKILGALNKKKLAGKFQALKGRLKEMKGNIQKTSGKEEQQDEQVGAVDQIKKKYGFSSSSNDTSTAKLAESKLQENLKKLQGINLRTTEMQDTAKSFSSLANQVLRTAEQQQDRRSS. 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03083 902 FunFam Syntaxin-binding protein 5 isoform A 28 280 - -
Seca12g03083 902 Gene3D - 300 668 IPR015943 GO:0005515
Seca12g03083 902 SMART WD40_4 403 444 IPR001680 GO:0005515
Seca12g03083 902 SMART WD40_4 244 329 IPR001680 GO:0005515
Seca12g03083 902 SMART WD40_4 342 381 IPR001680 GO:0005515
Seca12g03083 902 SMART WD40_4 63 103 IPR001680 GO:0005515
Seca12g03083 902 Pfam Lethal giant larvae(Lgl) like, C-terminal 431 673 IPR013905 -
Seca12g03083 902 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 2 892 - -
Seca12g03083 902 CDD R-SNARE_STXBP5_6 834 891 - -
Seca12g03083 902 Gene3D - 19 271 IPR015943 GO:0005515
Seca12g03083 902 SUPERFAMILY WD40 repeat-like 36 507 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03083 Seca-Chr12 60366129 60375754 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03083 - - gmx:100793138 1478.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03083 12 60366129 60375754 Seca12g03083 12 60366129 60375754 ECH