Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03059 ATGGGAGGAGACAGTACCGTTGATGAGGGTGTGACTGAATTGAAGGGCTCCGGAGGGGTCAACATCAACGTTCGGTGTTCGAATGGTTCTAAGTTTTCGGTTCAGATTGCTCTTGAATCCACTGTGGGATCGTTTAAGGATCTCGTCGCCCAGAACTGCGACATCCCCGCCCAACAACAGCGCCTCATTTACAAGGGTCGGATCTTGAAGGACGATCAAACCCTTCAAAGCTACGGTAATTCTATTTTCCGATGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTTTGCACCTACCAATACAACTGGTGGGACCAACAGTAGTGGCACCGATACCACAACGAATAATGCCAGAGGTGCTGGTGCTAATGATGGTGGGGGTTTAGGAGGGCTTGGTTTTGGAGCTTCACCCTTCTCTGGACTTGGTATCAATAGCATTGGGGGCAATGGCTTATTTGGCGAGGGATTTCCAGATCTTGAGCAAATGCAGCAACCATTTATTTCAAATCCCAATTTAATGAGAGAAATAATGAACACTCCTGCTATGCAGAATCTAATTAATAATCCTGAGATAGTGCGGAATCTTATAATGAATAACCCACAGATGCAAGAGCTCATGGATCGAAACCCGGAGCTAGCACATATACTTAATGATCCCAGCACTCTCCGCCAGACTCTTGAAGCTACAAGGAATCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGGGCAATGAGTAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGACGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACTACGATGGCTGGTAATACAGGAAATAATAATGCAGCAATTTCAGGGACTCATGGTGGCCAGGCCAGGGACCAATCAACAAATCCCTCTACTGCTAATTCTGAAACAACTGCTGGTTCACCCTTACCAAATACTAACCCGCTCCCTAATCCGTGGTCCTCTACAGGAACTGGAGGTGCCCAAAATAATACCAGAAGGTCAACCACTGGTGGGGATGCTAGGCAGCAAGCACCTACTGGCTTAGGAGGGCTTGGTTTGCCAGACCTTGAAGGCATGCTGGGTGGAAGTGTTATGCCAGATCCTGCTTCATTGATCCAGTTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATCCTTTCCAACCCACAAACTGTAAATCAGATCCTTGGTACTAATACTGATCAGCGTGGCATTCCTGATTTAAATTCTCTTAGAGAAGCGATGCAAAATCCAGAGTTCCTTCGATTGTTTTCTTCACCTGAGACATTGCAGCAACTCTTGTCTTTCCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAATCAACACGGGAATCAGGTCAAACTGGTGGAGGCACTGGATCATTGAACAACATGGGGTTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAATAGATCAAATGAGCCACCGGAGCAATTGTATGCCACCCAGCTTTCACAGCTTCAAGAGATGGGATTCTTTGACACACAAGAGAACATAAGGGCTCTTATTGCTACCTCAGGGAATGTTCATGCTGCAGTTGAACGGCTTTTGGGGAACTCTGGTCAGTAG 1650 0.4606 MGGDSTVDEGVTELKGSGGVNINVRCSNGSKFSVQIALESTVGSFKDLVAQNCDIPAQQQRLIYKGRILKDDQTLQSYGNSIFRCLEADHTVHLVRGFAPTNTTGGTNSSGTDTTTNNARGAGANDGGGLGGLGFGASPFSGLGINSIGGNGLFGEGFPDLEQMQQPFISNPNLMREIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNNNAAISGTHGGQARDQSTNPSTANSETTAGSPLPNTNPLPNPWSSTGTGGAQNNTRRSTTGGDARQQAPTGLGGLGLPDLEGMLGGSVMPDPASLIQLMQNPAISQMMQSILSNPQTVNQILGTNTDQRGIPDLNSLREAMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQSTRESGQTGGGTGSLNNMGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ. 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03059 549 Gene3D - 12 111 - -
Seca12g03059 549 Gene3D - 489 549 - -
Seca12g03059 549 SMART ubq_7 20 97 IPR000626 GO:0005515
Seca12g03059 549 MobiDBLite consensus disorder prediction 276 350 - -
Seca12g03059 549 CDD Ubl_Dsk2p_like 20 98 - -
Seca12g03059 549 MobiDBLite consensus disorder prediction 100 123 - -
Seca12g03059 549 FunFam Ubiquitin domain-containing protein DSK2b 198 254 - -
Seca12g03059 549 FunFam Ubiquitin domain-containing protein DSK2b 490 548 - -
Seca12g03059 549 SUPERFAMILY Ubiquitin-like 16 113 IPR029071 -
Seca12g03059 549 SMART CBM 201 240 IPR006636 -
Seca12g03059 549 SMART CBM 408 443 IPR006636 -
Seca12g03059 549 SMART CBM 151 188 IPR006636 -
Seca12g03059 549 SMART CBM 352 405 IPR006636 -
Seca12g03059 549 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 501 546 IPR015940 -
Seca12g03059 549 ProSiteProfiles Ubiquitin domain profile. 20 79 IPR000626 GO:0005515
Seca12g03059 549 PANTHER UBIQUILIN 20 544 IPR015496 -
Seca12g03059 549 SUPERFAMILY UBA-like 503 545 IPR009060 GO:0005515
Seca12g03059 549 Pfam UBA/TS-N domain 507 543 IPR015940 -
Seca12g03059 549 MobiDBLite consensus disorder prediction 455 475 - -
Seca12g03059 549 MobiDBLite consensus disorder prediction 100 122 - -
Seca12g03059 549 CDD UBA_PLICs 507 545 - -
Seca12g03059 549 SMART uba_6 507 545 IPR015940 -
Seca12g03059 549 Pfam Ubiquitin family 22 95 IPR000626 GO:0005515
Seca12g03059 549 Gene3D - 196 254 - -
Seca12g03059 549 FunFam Ubiquitin domain-containing protein DSK2b 17 109 - -
Seca12g03059 549 MobiDBLite consensus disorder prediction 276 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03059 Seca-Chr12 59477795 59486090 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03059 K04523 - gmx:100776447 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03059 12 59477795 59486090 Seca12g03059 12 59477795 59486090 ECH