Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03054 ATGAGAAGATCCGCCCCGCTCCTCAAACACCTCTTTGCTCGATCCCAATCCGAAGGATTCGGGTTCAGCTCCCCATCGCGACGATGGGTGACCTACATGCACCGGCCAGGTGACGGTGCCCCACGGCGGGTGACTCTGATCCCCGGCGACGGGATCGGCCCGCTGGTGACGGGGGCGGTGGAACAGGTCATGGAGGCGATGCACGCGCCGGTGTATTTCGAGAAGTTTGAGGTCCACGGGACTATGAAGGCTGTGCCTGCGGAGGTAATTGACTCGATCCGTAAGAACAAGGTGTGCCTTAAGGGAGGGCTTGTTACCCCTATGGGTGGTGGGGTTAGTTCCCTTAACGTGCAGCTCAGAAAGGAGCTGGATCTCTACGCTTCACTCGTCAATTGCTTCAACCTCCCTGGCTTGCCCACGCGCCACGACAACGTTGACATCGTCGTCATTAGGGAGAACACCGAAGGCGAGTACTCTGGCCTTGAACACGAGGTCGTTCCTGGCGTCGTTGAAAGCCTTAAGGTAATAACAAAGTTCTGTTCTGAGCGTATTGCCAAATATGCGTTTGAGTATGCTTACCTGAATAACAGAAAGAAAGTGACTGCTGTGCACAAAGCGAATATTATGAAGCTTGCAGATGGTTTATTCTTGGAATCATGTCGAGAGGTTGCCAAAAAGTATCCTGGAATTAAGTATAATGAAATTATTGTGGATAACTGCTGCATGCAGCTTGTTTCGAAGCCTGAGCAGTTTGATGTCATGGTGACCCCCAATCTTTATGGAAATCTTGTGGCAAATACTGCAGCAGGCATTGCTGGAGGCACTGGAGTCATGCCAGGAGGTACGGTAGTTGGTTATTACTGTATTGCAACTTTAGAGCTCTCATCTGATTATGTTGCCTTTTTAAATACTTCCTTGATCACTTTTACCATGTTATGCGATTGTAATGTTGGGGCTGAGCATGCTGTGTTTGAGCAAGGTGCTTCAGCAGGAAATGTTGGTAGTCAGAAAATAGTGGATCAGAAGACAGCCAACCCAGTGGCTCTTCTTCTCTCATCAGCTATGATGCTTAGGCATCTTCAGTTTCCTGCATTTGCAGACCGTTTGGAAACTGCTGTCGAACAAGTCATTCTGGAGGGCAAATACCGGACAAAGGATCTTGGTGGGACAAGCACCACCCAAGAGGTTGTCGATGCAGTGATCGATGCTTTAGATTGA 1218 0.4959 MRRSAPLLKHLFARSQSEGFGFSSPSRRWVTYMHRPGDGAPRRVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKFEVHGTMKAVPAEVIDSIRKNKVCLKGGLVTPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGTVVGYYCIATLELSSDYVAFLNTSLITFTMLCDCNVGAEHAVFEQGASAGNVGSQKIVDQKTANPVALLLSSAMMLRHLQFPAFADRLETAVEQVILEGKYRTKDLGGTSTTQEVVDAVIDALD. 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03054 405 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 38 404 - -
Seca12g03054 405 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 314 404 - -
Seca12g03054 405 Gene3D Isopropylmalate Dehydrogenase 31 404 - -
Seca12g03054 405 Pfam Isocitrate/isopropylmalate dehydrogenase 44 284 IPR024084 -
Seca12g03054 405 Pfam Isocitrate/isopropylmalate dehydrogenase 296 400 IPR024084 -
Seca12g03054 405 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 42 282 - -
Seca12g03054 405 SMART Iso_dh_2 43 400 IPR024084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03054 Seca-Chr12 59206831 59210883 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03054 K00030 - gmx:100777867 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03054 12 59206831 59210883 Seca12g03054 12 59206831 59210883 ECH