Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03049 ATGGCAGCTTCTAGTTCCCTTATCTTTCTCCCCACGCATAACCTCCTGGAAGGCTACTCTTGGAGATTTTCATGGCAAACTCCAAGGAATCAATTTGCAAAAGTATCGCGTTTGAGGGGGACACATGAACCGGTTCGTAGTTCACTGATGGGGGGGAGTGAATTAAGTATTAGTAGCACTACTACTACTACAATGGAGGGTCTACTTCGTAGTTCACTGATGGGGGGGAGTGAATTAAGTATTAGTAGCACTACTACTACTACAATGGAGGGTCTACTTCGTTGCCCTGCAAATTTTACTCCTTTGTCTCCTATCAGCTTCCTAGAGAGAGCAGCAAAGGTTTGTGGAGACAGAACCTCTCTTGTGTATGATTCTTTCAAGTATAGCTGGGGTGAAACCCATCAACGCTGTCTTAAACTTGCTTCTGCTCTCACTCAGTTGGGAATTTCTCGTGGGGATGTGGTTGCCACACTATCACCAAATGTCCCTGCAATGTATGAGCTGCATTTTGCAGTCCCAATGGCTGGAGCCATTCTTTGTACCCTAAATTCACGCCTAGATGCAGCTATGGTTTCAGTCCTATTGGAGCATTCACAAGCGAAGATCCTTTTTGTTGACTACCAATTACTTGAAATTGCTCATGGAGCATTGGACCTGCTAGGTAAAAGAGCAAGAAGACCTCCAATTTTAGTGTTAATTACTGACTCTGATTGCTCATCTATCATTGACATCTCTTCAATTAGTTATGAGTATGAGAAGCTACTGGCTGTTGGGCATAACTATTTTGATATAGTGAGACCACATAGTGAATGGGATCCTATAAGTATAAATTACACTTCTGGAACCACATCTAGGCCTAAAGGGGTTGTCTACAGTCACAGGGGTGCTTATCTGAACTCTCTAGCAACAGTTCTACTCTTTATAATGGATCTCTTTCCTGTTTATCTTTGGAATGTTCCATTGTTCCATGCCAATGGGTGGTGCCTCCCTTGGGGAGTGGCAGCACAATTTGGAATCAATGTTTGTCTTAGGAAAGTCACTCCAAAGAACATATTTGACAACATAACTCAGCATAAGGTGACACACATGGGAGGAGCTCCTACAGTGCTGAACATGATTGTGAACTCTAAATTGACTGATAGAAAGCCACTCAATCACAAGGTGGTAGTCATGACAGGAGGTTCTCCTCCACCACCACAGATCCTTTCCAAGATGGAGGAAATTGGTTTCAGTGTTTCTCAACTTTATGGCCTCACAGAAACATATGGTCCAGGTACTTTCTGTGCATGGAGACCTGAGTGGGACACACTGCCTCTTGAAGAGAGATCAAAGTTAAAAGCAAGGCAAGGGGTGCCCCATGTGGGTTTGGAGGAAATTGATGTCAAAGATCCTGCCACAATGGAAAGTGTTCCAGCTGATGGCACAACAATGGGTGAAGTAATGTTTAGAGGGAATACAGTGATGAGTGGATATCTTAGAGATTTGAAGGCAACAGAAGAAGCATTCAAAGATGGGTGGTTTCATAGTGGGGATCTTGGTGTGAAACACTCTGATGGTTATATAGAAATCAAGGACAGATTGAAGGACATAATAGTCTCTGGGGGAGAAAATATTAGCTCAGTTGAGGTAGAAACAGTTTTGTATAGCCATCCAACAGTTCTTGAAGCTGCAGTTGTAGCCCGGCCAGATGATCATTGGGGTCAAACTCCTTGTGCATTTGTGATGTTGAAAGATGGGTTTGATGCAAATGCTCAAGAAATAATCAACTTCTGCAGGGACCATTTGCCACATTACATGGCTCCTAAAACAGTCATTTTTCAAGATATGCCGAAAACTGCAACAGGGAAGATACAGAAGTATGCTCTAAGGGAGAAAGCCAAGGCCTTGGGCAGCATTTCTAGACCCCAAGAATGTCAAAATTTGTAG 1926 0.432 MAASSSLIFLPTHNLLEGYSWRFSWQTPRNQFAKVSRLRGTHEPVRSSLMGGSELSISSTTTTTMEGLLRSSLMGGSELSISSTTTTTMEGLLRCPANFTPLSPISFLERAAKVCGDRTSLVYDSFKYSWGETHQRCLKLASALTQLGISRGDVVATLSPNVPAMYELHFAVPMAGAILCTLNSRLDAAMVSVLLEHSQAKILFVDYQLLEIAHGALDLLGKRARRPPILVLITDSDCSSIIDISSISYEYEKLLAVGHNYFDIVRPHSEWDPISINYTSGTTSRPKGVVYSHRGAYLNSLATVLLFIMDLFPVYLWNVPLFHANGWCLPWGVAAQFGINVCLRKVTPKNIFDNITQHKVTHMGGAPTVLNMIVNSKLTDRKPLNHKVVVMTGGSPPPPQILSKMEEIGFSVSQLYGLTETYGPGTFCAWRPEWDTLPLEERSKLKARQGVPHVGLEEIDVKDPATMESVPADGTTMGEVMFRGNTVMSGYLRDLKATEEAFKDGWFHSGDLGVKHSDGYIEIKDRLKDIIVSGGENISSVEVETVLYSHPTVLEAAVVARPDDHWGQTPCAFVMLKDGFDANAQEIINFCRDHLPHYMAPKTVIFQDMPKTATGKIQKYALREKAKALGSISRPQECQNL. 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03049 641 CDD ttLC_FACS_AEE21_like 99 624 - -
Seca12g03049 641 FunFam 2,3-dihydroxybenzoate-AMP ligase 528 630 - -
Seca12g03049 641 FunFam Long-chain-fatty-acid--CoA ligase FadD 90 528 - -
Seca12g03049 641 Gene3D - 528 630 IPR045851 -
Seca12g03049 641 Gene3D - 93 527 IPR042099 -
Seca12g03049 641 Pfam AMP-binding enzyme C-terminal domain 542 616 IPR025110 -
Seca12g03049 641 PANTHER ACYL-ACTIVATING ENZYME 89 632 - -
Seca12g03049 641 SUPERFAMILY Acetyl-CoA synthetase-like 89 627 - -
Seca12g03049 641 Pfam AMP-binding enzyme 109 533 IPR000873 -
Seca12g03049 641 ProSitePatterns Putative AMP-binding domain signature. 276 287 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03049 Seca-Chr12 58859583 58869133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03049 165 634 Miscellaneous Gene Families AT1G20560 64.195 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03049 - - gmx:100500429 978.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03049 12 58859583 58869133 Seca12g03049 12 58859583 58869133 ECH