Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02984 ATGGCATCTTCATGGGAACATTTTGGGGAGATTGCAAATGTGGCCCAGTTGACGGGCATAGATGCGGTGAGGTTAATTGGGATGATTGTGAAAGCTGCAAATACAGCACGGATGCACAAGAAGAATTGCAGGCAGTTTGCACAGCATTTGAAGTTGATTGGGAACTTGCTGGAGCAGCTCAAGATCTCTGAGCTTAAGAAGTACCCTGAAACTAGGGAGCCTCTGGAGCAGCTAGAAGATGCTCTGAGAAGGTCTTACATTTTAGTCAATAGTTGTCAGGATCGCAGTTATCTTTATTTGCTTGCCATGGGATGGAACATTGTTTACCAATTCAGGAAGGCTCAGAATGAAATTGACAGATACTTGCGACTTGTTCCTCTCATTACTCTAGTTGACAATGCTCGAGTCAGGGAGAGACTCGAAGTTATTGAAAAGGATCAGTGTGAGTACACATTGGATGATGAGGAACAAAAGGTGCAGACTGTTATTTTGAAACCTGAGCCTGACAAAGATGACACCGTAGTGCTGAAGAAAACACTTTCCTGTTCTTACCCTAACTTTTCTTTCACTGAAGCACTTAAAAAAGAAAATGAAAAGCTTCAACTAGAGCTACAACATTCACAAGTAAATATGGATATAAATCAGTGTGAATTCATTCAGCGTTTATTAGATGTCACAGAAGTTGCAGCTTATTATCTTCCGGAGAACTCACCTGAAAAAAGTCACAAGACAGTAGAGTACAGTAATTACAGCTATTCTGATGCCAATGGTAGCAAGGGTCATTCTTCTGATGAAAAATACCATAAAAAGAGTGATACTCTTCCAGCATCAAGATCATCAGTTTCAGAAAAGGATATGCCATCAACTGGAGGTTCATATAATCAGGAGGAAGATTGGCAAACTGATTTACTTGCTTGTTTCTCAGAACCTTATCTTTGTATAAAGACATTCTTCTTTCCTTGTGGGACATTTTCAAAGATTGCTACTGTGGCAACTAACAGGCCAATATCTTCTGCAGAAGCATGTAATGAATTGATTGTATATTCATTAGTTTTATCTTGCTGTTGCTATACTTGCTGCATAAGGAGGAAGCTTCGAAAGATGTTGAATATCACGGGAGGCTTTGTTGACGATTTTCTTTCTCATTTGATGTGTTGCTGCTGTGCCCTTGTGCAAGAATGGAGAGAAGTGGAGATTCGTGGGATTTGTGGTATGACTCCATCATTTCAGCTTTCTCAAAATTTAAGTCCTGAGAAGACGAGCACATGCCCTCCAACCTCACAGTGCATGGAATATTAA 1299 0.4026 MASSWEHFGEIANVAQLTGIDAVRLIGMIVKAANTARMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYILVNSCQDRSYLYLLAMGWNIVYQFRKAQNEIDRYLRLVPLITLVDNARVRERLEVIEKDQCEYTLDDEEQKVQTVILKPEPDKDDTVVLKKTLSCSYPNFSFTEALKKENEKLQLELQHSQVNMDINQCEFIQRLLDVTEVAAYYLPENSPEKSHKTVEYSNYSYSDANGSKGHSSDEKYHKKSDTLPASRSSVSEKDMPSTGGSYNQEEDWQTDLLACFSEPYLCIKTFFFPCGTFSKIATVATNRPISSAEACNELIVYSLVLSCCCYTCCIRRKLRKMLNITGGFVDDFLSHLMCCCCALVQEWREVEIRGICGMTPSFQLSQNLSPEKTSTCPPTSQCMEY. 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02984 432 CDD MLKL_NTD 22 147 - -
Seca12g02984 432 Pfam MCAfunc domain 25 167 IPR045766 -
Seca12g02984 432 PANTHER PROTEIN MID1-COMPLEMENTING ACTIVITY 1 2 402 - -
Seca12g02984 432 MobiDBLite consensus disorder prediction 274 294 - -
Seca12g02984 432 Coils Coil 190 210 - -
Seca12g02984 432 Gene3D - 11 128 IPR036537 GO:0007166
Seca12g02984 432 FunFam DNA mismatch repair protein MLH1 13 128 - -
Seca12g02984 432 Pfam PLAC8 family 299 396 IPR006461 -
Seca12g02984 432 NCBIfam uncharacterized Cys-rich domain 298 398 IPR006461 -
Seca12g02984 432 MobiDBLite consensus disorder prediction 256 294 - -
Seca12g02984 432 MobiDBLite consensus disorder prediction 259 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02984 Seca-Chr12 57284194 57289172 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02984 - - tpra:123882381 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02984 12 57284194 57289172 Seca12g02984 12 57284194 57289172 ECH