Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02961 ATGGCAAAGCGAAACTGCGTCATTTTACTGTCATCGGAGGATGAGGATGTTTCCAATACTCCTTCATTGAGGTCGAGCCGCAGCGATACAAAGCCCAAGTCAAGGTCGAGGTCAACAGCCTCCCGAGGAAAGAAGAGGGCCCGAGTTTCAAGGTCTGGGCCTCACCTCTCTAAGCTTCATGAGATTGACTTATTTGGAGACGACTTCAATGAAGTGTTTACTGGGTCAAAGGTATCCGCTGGTATATGTAGGAGCAACGCAGAGGAGCTATGGGTTGACAAGTACAAGCCTCGTTCACTGGAAGAGCTTGCTGTTCACAAGAAAAAGGTTGAAGAAGTTAAGAAGTGGTTCGAGGAAAGGTTGACACCTTCAGAGGGTATCCACAGAAATAACGTTCTTGTCATCAGTGGGCAGGCAGGAGTTGGAAAATCTGCTACTATTCATGTAATTGCATCTCATCTGGGAGCGGTAGTATGTGGATGGAACACACCTACACCAGTAATTTGGCAAGAACATCTTCATAACTCTGGCACAGGGACACAATACACATCCAAGTTGGATGAATTTGAAACTTTTGTTGAGAGAATACGGAAATATGGATTAATGCCAACTTCCTTCACTGAGCAGTCAAAGCCTTCCATCATACTTTTAATAGATGATCTTCCCATGATGAATGGGAAAGCTGCTTTTGGAAGACTTAAAGATTGCTTGCACCTGTTGGTGCACTCAACTCAGATACCCACTGCAATATTGGTGACAGATTATGGAAATGCTGATTCAGCAGATTATAATACATGGTGCCTGCAAGAACTAAAGCTATCTCTGGAGAGTGCTGGGGCTTGTAAGGTTGCATTCAATCCAATTACAGTGAATTCTATTAAGAAGATACTTTTCAGAATATGTCAAATGGAGCAGTGTGGTGTGACTGCTGAGCATGTTGATCTAATAGCAAAAGCAAGTGAAGGTGACATCAGACATGCAATTACTTCTTTACAGTTTTTCTGTCTGAAACCAAATCGGTTGCATTGTTTGTCTCTATCTACTCACTCTGCTGGTACATTAAAAGAGGAAAGTGATAAAGCTCTTAGATTGGATGATGGATATTCCTTACACTTTGGCAGAGATGAGACACTATCATTATTTCATGCCTTGGGGAAATTTTTGCACAATAAAAGGGAGACTGGAGTTGCATTAGATTATGACCAAAGTGGCTTTCTTTTACGAGAAAGATTTGCAAGACTTCCATTAAAAATGGATGTCCCAGAGAAGATTCTTTCTCAAGCCCACGTGCAACCTGGTCCAGTTGCTGATTTTCTGCATGAAAATGTTCTAGATTTTTTGAATGATGAGGCTATAGATGATGCGTGGATTTTGTCTTCATATCTTGGTGATGCTGACATTCTTCTCGCTAAACTTCGGGGAATGCTATCTAGTTATTATAATGAGGCAGAGAGTGTTTTACAATCAGCTGCTGCATCCATTGCTGTTCGTGGGGTGCTATTTGGAAATTCTCATCCACTTTCCTCCAGGTCATCATTATATGCTTGCAGTCTTCTCTGTATAGCAGACCTTTCTGTTTCTGTTTATTTGAATCTGTTTACTTATACAGGTGGCATGCAATTCGTCGACCGAAGCTCTGGCAGGTTGAGAAAACATCATTATACAACAAAGTAA 1674 0.4164 MAKRNCVILLSSEDEDVSNTPSLRSSRSDTKPKSRSRSTASRGKKRARVSRSGPHLSKLHEIDLFGDDFNEVFTGSKVSAGICRSNAEELWVDKYKPRSLEELAVHKKKVEEVKKWFEERLTPSEGIHRNNVLVISGQAGVGKSATIHVIASHLGAVVCGWNTPTPVIWQEHLHNSGTGTQYTSKLDEFETFVERIRKYGLMPTSFTEQSKPSIILLIDDLPMMNGKAAFGRLKDCLHLLVHSTQIPTAILVTDYGNADSADYNTWCLQELKLSLESAGACKVAFNPITVNSIKKILFRICQMEQCGVTAEHVDLIAKASEGDIRHAITSLQFFCLKPNRLHCLSLSTHSAGTLKEESDKALRLDDGYSLHFGRDETLSLFHALGKFLHNKRETGVALDYDQSGFLLRERFARLPLKMDVPEKILSQAHVQPGPVADFLHENVLDFLNDEAIDDAWILSSYLGDADILLAKLRGMLSSYYNEAESVLQSAAASIAVRGVLFGNSHPLSSRSSLYACSLLCIADLSVSVYLNLFTYTGGMQFVDRSSGRLRKHHYTTK. 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02961 557 MobiDBLite consensus disorder prediction 13 27 - -
Seca12g02961 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 336 IPR027417 -
Seca12g02961 557 MobiDBLite consensus disorder prediction 37 53 - -
Seca12g02961 557 Gene3D - 289 360 - -
Seca12g02961 557 Pfam Rad17 P-loop domain 86 255 - -
Seca12g02961 557 CDD HLD_clamp_RFC 288 333 - -
Seca12g02961 557 FunFam RAD17 checkpoint clamp loader component 88 266 - -
Seca12g02961 557 Gene3D - 88 269 IPR027417 -
Seca12g02961 557 MobiDBLite consensus disorder prediction 13 53 - -
Seca12g02961 557 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 87 510 IPR004582 GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02961 Seca-Chr12 56542308 56548659 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02961 K06662 - gmx:100799826 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02961 12 56542308 56548659 Seca12g02961 12 56542308 56548659 ECH