Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02956 ATGTTGCAAGACATGTGGAATGCTCCCCCAGGTTTCAGACCCTCCAAGTCTGCACCTTCTTCTCCGGCAAAGCCTCTTGGGGTTCCCAGAACTCGATCTGAATCTTTCCACGTCACCCACAAGGTCCCAGTTGGGGATACTCCTTATGTCAGAGCAAAAAACGTTCAGTTCTATGTTCAGTTGGTGGAAAAGGACCCGGAGAGAGCAATTCCACTGTTTTGGGCAGCCATTAATGCAGGAGATAGAGTGGATAGTGCTTTGAAAGATATGGCTATTGTGATGAAGCAGCAGAATCGATCGGAAGAAGCCATTGAAGCTATTAAATCACTTCGAAGTAGATGTTCAGATCAAGCCCAAGAATCTCTTGATAATATCCTCTTGGATCTTTACAAGAGGTGTGGGAGACTTGATGACCAAATTGCTCTCTTGAGGCACAAGCTCTACTTGATTCAACAAGGGTTGGCTTTCAATGGCAAGCGCACAAAGACTGCAAGATCTCAAGGGAAGAAGTTTCAAGTCTCTGTAGAACAAGAAGCCACTAGATTACTGGGAAACTTGGGATGGGCACTGATGCAACAGAACAACTACATTGAAGCAGAAGAAGCTTACAGGCGTGCACTTTCAATAGCTCCAGATAACAACAAGATGTGCAATTTGGGCATCTGTTTGATGAAGCAAGGGAGAATTGGTGAGGCAAAAGAAACTCTGTGTAGGGTAAAACCTGCAGTTATAGATGGCCCAAGAGGCTCAGATTCTCATCTGAAAGCCTATGAAAGGGCACAGCAAATGCTCAAAGACCTTGAGTCTGAGATGATGAATAAAGGAGGGGATAGGATTGAACAAAGCAGGCTATTTGAAGCTTTTCTTGGTTCTTCATCAATCTGGCAACCTCAGCCTTGTAAGGACCACCACACAAGCTTGCCAGCAATGAATTCAGTCAGAACACAAGATGAATTTGGGGATGAGAACATCAATTCCAACATAATAGCAACAAATCACACAGCACCACCACCACAGCATAAAGGTAGCAGCAAACAGGTTGCCATGTTGGGGGCTAACACACTTAATGTTGCAGCCCCACCATTTTATGCATCATCAAAGATTTTCAAGGAGCCTGTGTTAAGATCACAAAATGAGAATCATATCTCAGAGACCCTAAAGAGAACAAGGTCTGGAAATTCTGCAGGCTCCATGAGAGTGAATAATGATGTGGGGGATATCAACAAGTTGCATATGGAATTAGGTGTGCCAGAGAACAAAACAAGAAGGCTCTCATCAGAGGACTCTGAGAACAACAAGTGGACAGATTTGTTACCAGATAACAAGGACTTTGAGGATGCTATTCTTGCTGCAATTTTGGGGCCAGCAAATGAGTCAGATAAAGCCAATGACACGAGCAGCAGCAGCACTACCTCTGGGATTTTCCAGAAGAAAACTGACAAGAGGCTTAAGGTTTTTCAAGATATTACATTATCTTTGAGTCCAAGGGCCTGA 1494 0.4398 MLQDMWNAPPGFRPSKSAPSSPAKPLGVPRTRSESFHVTHKVPVGDTPYVRAKNVQFYVQLVEKDPERAIPLFWAAINAGDRVDSALKDMAIVMKQQNRSEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLRHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEEAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLCRVKPAVIDGPRGSDSHLKAYERAQQMLKDLESEMMNKGGDRIEQSRLFEAFLGSSSIWQPQPCKDHHTSLPAMNSVRTQDEFGDENINSNIIATNHTAPPPQHKGSSKQVAMLGANTLNVAAPPFYASSKIFKEPVLRSQNENHISETLKRTRSGNSAGSMRVNNDVGDINKLHMELGVPENKTRRLSSEDSENNKWTDLLPDNKDFEDAILAAILGPANESDKANDTSSSSTTSGIFQKKTDKRLKVFQDITLSLSPRA. 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02956 497 Coils Coil 93 113 - -
Seca12g02956 497 Gene3D Tetratricopeptide repeat domain 56 275 IPR011990 GO:0005515
Seca12g02956 497 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Seca12g02956 497 SMART tpr_5 180 213 IPR019734 GO:0005515
Seca12g02956 497 MobiDBLite consensus disorder prediction 457 477 - -
Seca12g02956 497 SUPERFAMILY TPR-like 61 283 IPR011990 GO:0005515
Seca12g02956 497 Pfam Tetratricopeptide repeat 182 213 IPR001440 GO:0005515
Seca12g02956 497 ProSiteProfiles TPR repeat region circular profile. 180 213 - -
Seca12g02956 497 PANTHER PROTEIN POLLENLESS 3-LIKE 2 15 491 IPR044961 -
Seca12g02956 497 MobiDBLite consensus disorder prediction 1 34 - -
Seca12g02956 497 Coils Coil 250 277 - -
Seca12g02956 497 MobiDBLite consensus disorder prediction 459 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02956 Seca-Chr12 56450770 56452977 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02956 - - adu:107476429 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02956 12 56450770 56452977 Seca12g02956 12 56450770 56452977 ECH