Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02953 ATGGCGAGGTATGACAGAGCGATCACGGTTTTCTCGCCCGATGGCCATCTCTTCCAAGTCGAGTACGCCCTCGAAGCCGTTCGTAAAGGGAACGCCGCCGTCGGCGTCCGCGGCACCGACAACGTCGTTCTCGGCGTCGAGAAGAAATCCACCGCCAAGCTCCAAGACTCCAGCAGAACGGTGAGGAAGATTGTTAATCTGGACAATCATGTTGCCCTTGCTTGTGCAGGACTAAAAGCTGATGCCCGTGTCCTCATTAACAGGGCACGAGTTGAATGTCAAAGTCACAGACTTACTGTCGAGGATCCAGTGACAGTTGAGTACATAACTCGTTACATTGCAGGTCTTCAGCAGAAATACACACAAAGTGGTGGTGTGCGACCCTTTGGCCTTTCAACCTTGATTGTTGGCTTTGATCCATACACCGGTGCACCGTCGCTGTACCAAACAGACCCTTCTGGTACATTTTCTGCTTGGAAAGCTAATGCAACTGGAAGAAACTCGAATTCTATTCGGGAGTTCCTAGAGAAGAACTATAAAGAAACTTCTGGGCAAGAAACTATCAAATTGGCTATCCGAGCATTGCTTGAAGTTGTTGAGAGTGGAGGCAAGAACATAGAAGTTGCTGTGATGACTAAGGAGGATGGTCTGAGACAACTGGAGGAGGCTGAAATTGATGCCATTGTCGCTGAGATTGAAGCAGAGAAAGCAGCTGCTGAGGCTGCAAAGAAAGCCCCTCCTAAGGAGACATGA 753 0.494 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDNVVLGVEKKSTAKLQDSSRTVRKIVNLDNHVALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGAPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQETIKLAIRALLEVVESGGKNIEVAVMTKEDGLRQLEEAEIDAIVAEIEAEKAAAEAAKKAPPKET. 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02953 250 Coils Coil 220 245 - -
Seca12g02953 250 Pfam Proteasome subunit A N-terminal signature 4 26 IPR000426 GO:0006511|GO:0019773
Seca12g02953 250 ProSitePatterns Proteasome alpha-type subunits signature. 4 26 IPR000426 GO:0006511|GO:0019773
Seca12g02953 250 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 3 239 IPR029055 -
Seca12g02953 250 CDD proteasome_alpha_type_7 4 211 - -
Seca12g02953 250 Pfam Proteasome subunit 27 211 IPR001353 GO:0005839|GO:0051603
Seca12g02953 250 ProSiteProfiles Proteasome alpha-type subunit profile. 19 229 IPR023332 -
Seca12g02953 250 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 8 235 - -
Seca12g02953 250 FunFam Proteasome subunit alpha type-4 1 242 - -
Seca12g02953 250 SMART Proteasome_A_N_2 4 26 IPR000426 GO:0006511|GO:0019773
Seca12g02953 250 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 3 235 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02953 Seca-Chr12 56355856 56359570 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02953 K02731 - gmx:100808731 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02953 12 56355856 56359570 Seca12g02953 12 56355856 56359570 ECH