Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02945 ATGGCAAATACTAGGAATTTAGCTGGTGCAGAGTCTCTCTGTTTTCTTCTTCTCTTGCTTTGTTTCCATGGCACAGGCACACTAGTTTGTGCTAAATATATAAAGTATAATACTGGGGCTGGTGTTGTGCAAGGAAAATTGAATGTTCACCTTGTTCCTCATTCCCACGATGATGTTGGTTGGCTCAAGACCGTTGATCAGTACTATGTTGGATCAAACAATAGTATTCAGGGGTTTTTCCATCGATGGTGGGTAGAACAAAGTCCAGAAACACAAGAACAAGTGAGAAAGCTTGTGGATGCAGGGCAGTTAGAATTCGTAAATGGTGGATGGTGCATGCATGATGAAGCCACGTGTCACTACATAGATATGATTGACCAAACGACATTGGGTCATCTCTTCATCAAGGAGCAGTTTAACAAGACCCCTCGTGCTGGATGGCAGATTGATCCATTTGGACATTCTGCTGTGCAGGGATATTTACTAGGAGCTGAGCTTGGGTTTGATTCAGTACACTTCGCTAGGATCGATTATCAAGATAGAGCTAAGCGCAAAGGTGACAAGTCTCTTGAAGTTATTTGGCGTGCCTCCAAAACATTTGGTTCTTCAGCTCAGGATGATCCTCTTCTCTTTGATTACAATGTTGAACAGCGAGTCAATGATTTTGTTAATGCTGCTCTTACCCAAGCAAATGTGACAAGGACAAACCATATTATGTTTACAATGGGTGATGATTTCCAGTACCAATATGCAGAATCTTGGTTCAAACAAATGGATAAATTAATTCACTATGTTAACAAGGATGGGAGAGTGAATGCCTTATATTCTACTCCATCTATTTACACCAATGCCAAAAATGCTGCAAATCAATCTTGGCCCCTCAAAACTGATGATTACTTCCCGTATGCAAGTGCACCAAATGCTTATTGGACAGGCTTCTTCACCAGTCGCCCGGGCTTAAAGCGATACGTTAGGATGCTAAGTGGATACTATTTGGCAACACGACAACTTGAATTTTTTGCTGGCAAGAAATCAGTTGCTTACCAGACTTTTGACCTTGGAGATGCTCTAGGAATTGCACAACACCATGATGCTGTCACTGGCACTGCCAAACAACATACAACTGATGACTATGCCAAACGATTGGCTATTGGAGCCTCTAAGGCTGAAGCAGTTGTTAGTTCTTCTTTGGCGTGTCTTACTAGTAAGAAATCTGGTGGTCAATGTTCAGCACCCGCATCAGCATTTTCCCAATGTCAATTACTCAATATTAGTTACTGCCCTCCGACAGAAGACAATATTCAAGCAGCTAAGAGTTTGGTAGTAGTGGTGTATAACCCACTTGGATGGAACCGTACTGATATTGTCAGAATACCAGTTAATGATGCTAATCTGGTTGTCAAAGATTCATCCGGCAATAAGCTTGAAACACAATATGTGGAAGTGGATGATGTTACAACAAATTTAAGAAAATTATATGTGAAGGCTTATTTGGGGCTGTCTTTAAAACAAGCCCCAAAGTACTGGCTTCTGTTTCAGGTGTCAATACCTCCACTTGGATGGAGTACATACTTCATTTCTGAAGCAGTTGGAAAAGGGACAAGGAGAAAAGCAGATATCTCAGACCTCAGCAGAAAGAAAGGTGAGAGCATTGACATAGGGCCGGGAAATTTAAAGATGTCCTTTTCTTCAACCTCTGGACAACTCAAACGGATGTATAGTTCCAAAACTAGAGTTGATATACCAATTCAGCAAAGCTACCTCTGGTATGGTTCTAGTGAGGGTGACAATGCTGATAGTCAGGCTTCTGGTGCATATATATTCCGACCTAGTGGATCCTCTCCAAATATTGTTTCAAGATCAGTGCCCTTCAAGGTAATCCGTGGACCGCTAGTTGATGAGGTTCATCAGAAGTTTAGTTCTTGGATTTACCAGGTCACTAGACTTTACAAAGACAAAGACCATGCTGAAATAGAATTCACTATTGGTCCAATTCCTACTGATGATGGGGTTGGAAAAGAGGTAATCACCCGAATGACGACAAATATGGCCACAAACAAGGAGTTTTATACTGATTCTAATGGAAGAGATTTTCTGAAACGGGTTCGAGATCATAGGGATGATTGGCCCCTTCAAATTACTCAACCTGTAGCAGGAAATTATTATCCACTTAATCTTGGAATTTATACAAAGGATAAGAAATCTGAATTCTCAGTCTTAGTTGATCGTGCTACTGGTGGAGCCAGCATCGAAGATGGTGAGGTGGAATTGATGCTTCACAGGCGTATTCTCCATGATGATGCTAAAGGAGTAGGGGAAGCACTTGACGAACAAGTTTGCGTGAAGAATAATACATGTGAAGGACTAACAGTCAGAGGAAATTATTATATCGGCATCCACAATGTTGGAGCTGGTTCACGCTGGCGTCGAACCACTGGTCAGGAAATTTACTCACCACTCTTATTGGCTTTTACACATGAGAACTCAGAAAATTGGAAGTCCTCCCATTTGACTAAAGGAACTGTCATGGATCCAAATTACAGCTTGCCCCCTAATGTTGCTTTGATAACTCTTGAGGAGTTGGAAGGTGGAATTGTTCTTCTCCGTTTGGCACATCTATATGAGCCAAGCGAAGATGCTGAGTTTTCAACTCTGGCCAAAGTTGAATTGAAAAAGTTGATTGCCACAAAAACGATAAAGGAGTTGAAGGAGGTAAACTTATCAGCTAACCAAGAAAAATCAGAAATGAAGAAGATGACATGGAAGGTTGAAGGGGACAGAGGACAAGAACCTCAAGCAGTTAGGGGTGGTCCTGTTAGCACTTCCAATTTTGTTGTTGAGCTTGGGGAAAAAAAACAGCACCGACGCCGTCTCCGGAAAAAGGACGAGGGTTCCAGCATGTTGAGCTACGGCTTGACGATTGCATCGAAGGGGCAGGAGGGTTTGTTGAAGGATCTGGATAATGTTTTGCAAGAATGCAGCAATTTCACTGTGCAGAAGGTGTCAGAGAAGGCGAAGAAGAAGGGAGAGGCTCTGGATGGTTCTGTGGCGAAGGAGATATCGCCGGCGGATTTGACGAAGGAGGAGAAGAAGGAAATGTTGGAGGAGAGATGTGCTGCTTATTGGACCACGTTGGCTCCTAATGTGGAGGATTATAGTGGAACCGCTGCGAGGCTCATTGCTGCTGGGTCTAGCCAACTAGTTAAGGGGATTTTGTGGTGTGGGGATGTCACTGTTGAGAGGCTAAAATGGGGAAATGAGATCATGAAGAAGAGGATGGGTTCCCCTTCACAGGCAGATATTAGTCCTGAAACCTTAAAGCGGATTAAAAGGGTTAAGAGAGTGACTAAAATGACCGAGAATGTAGCGAATGGGGTCCTCTCTGGGGTTGTGAAGGTCTCTGGATTTTTCACTAGTTCAGTGGCAAATTCAAAAGCAGGAAAGAAATTTTTCAGCCTTCTACCAGGAGAAGTTGTGCTTGCATCATTGGATGGATTCAGTATGTCAGTTACCTTAATACCTGTATTTGAGGTACGGAATTCACAAAAGATTCTAAAATCCCAACTGATTCACGTGTTTAGTATTTCCTTTATCATTTGGATGAAGTTCTTTTGCAAGAGTAGGATCTATGAACTGAGGAATATGGAGATCTTGAATTCCCAAGTATCCTTCATCACCATGATGGCACCCAATTTACTGAGATATGGAGAAGAAGCTGCTAAGGCAACAACTGAAGGACTGGATGCTGCTGGTCATGCTGTGGGGACTGCATGGGCTGCTTTTAAGATTCGGCAGGTTCTTAATCCTAAGAGTGTTCTAAAACCTACCAGCCTGGCCAAATCTGCGGCTAAAGCTGCTGCTGTTGAATTTATGGCTAAAAAATCCAAGTGA 3891 0.4256 MANTRNLAGAESLCFLLLLLCFHGTGTLVCAKYIKYNTGAGVVQGKLNVHLVPHSHDDVGWLKTVDQYYVGSNNSIQGFFHRWWVEQSPETQEQVRKLVDAGQLEFVNGGWCMHDEATCHYIDMIDQTTLGHLFIKEQFNKTPRAGWQIDPFGHSAVQGYLLGAELGFDSVHFARIDYQDRAKRKGDKSLEVIWRASKTFGSSAQDDPLLFDYNVEQRVNDFVNAALTQANVTRTNHIMFTMGDDFQYQYAESWFKQMDKLIHYVNKDGRVNALYSTPSIYTNAKNAANQSWPLKTDDYFPYASAPNAYWTGFFTSRPGLKRYVRMLSGYYLATRQLEFFAGKKSVAYQTFDLGDALGIAQHHDAVTGTAKQHTTDDYAKRLAIGASKAEAVVSSSLACLTSKKSGGQCSAPASAFSQCQLLNISYCPPTEDNIQAAKSLVVVVYNPLGWNRTDIVRIPVNDANLVVKDSSGNKLETQYVEVDDVTTNLRKLYVKAYLGLSLKQAPKYWLLFQVSIPPLGWSTYFISEAVGKGTRRKADISDLSRKKGESIDIGPGNLKMSFSSTSGQLKRMYSSKTRVDIPIQQSYLWYGSSEGDNADSQASGAYIFRPSGSSPNIVSRSVPFKVIRGPLVDEVHQKFSSWIYQVTRLYKDKDHAEIEFTIGPIPTDDGVGKEVITRMTTNMATNKEFYTDSNGRDFLKRVRDHRDDWPLQITQPVAGNYYPLNLGIYTKDKKSEFSVLVDRATGGASIEDGEVELMLHRRILHDDAKGVGEALDEQVCVKNNTCEGLTVRGNYYIGIHNVGAGSRWRRTTGQEIYSPLLLAFTHENSENWKSSHLTKGTVMDPNYSLPPNVALITLEELEGGIVLLRLAHLYEPSEDAEFSTLAKVELKKLIATKTIKELKEVNLSANQEKSEMKKMTWKVEGDRGQEPQAVRGGPVSTSNFVVELGEKKQHRRRLRKKDEGSSMLSYGLTIASKGQEGLLKDLDNVLQECSNFTVQKVSEKAKKKGEALDGSVAKEISPADLTKEEKKEMLEERCAAYWTTLAPNVEDYSGTAARLIAAGSSQLVKGILWCGDVTVERLKWGNEIMKKRMGSPSQADISPETLKRIKRVKRVTKMTENVANGVLSGVVKVSGFFTSSVANSKAGKKFFSLLPGEVVLASLDGFSMSVTLIPVFEVRNSQKILKSQLIHVFSISFIIWMKFFCKSRIYELRNMEILNSQVSFITMMAPNLLRYGEEAAKATTEGLDAAGHAVGTAWAAFKIRQVLNPKSVLKPTSLAKSAAKAAAVEFMAKKSK. 1297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02945 1296 Gene3D Glycoside hydrolase family 38, central domain 351 406 IPR037094 GO:0004559|GO:0006013
Seca12g02945 1296 Pfam Senescence domain 1234 1284 IPR009686 -
Seca12g02945 1296 Pfam Senescence domain 1059 1167 IPR009686 -
Seca12g02945 1296 Gene3D Glycoside hydrolase family 38, central domain 272 350 IPR037094 GO:0004559|GO:0006013
Seca12g02945 1296 SUPERFAMILY Families 57/38 glycoside transferase middle domain 308 407 IPR028995 -
Seca12g02945 1296 FunFam Alpha-mannosidase 418 529 - -
Seca12g02945 1296 Pfam Glycosyl hydrolases family 38 C-terminal domain 554 768 IPR011682 GO:0004559|GO:0006013
Seca12g02945 1296 FunFam Alpha-mannosidase 838 952 - -
Seca12g02945 1296 PANTHER ALPHA-MANNOSIDASE 18 948 - -
Seca12g02945 1296 CDD GH38N_AMII_LAM_like 47 267 - -
Seca12g02945 1296 Gene3D - 551 818 - -
Seca12g02945 1296 FunFam Alpha-mannosidase 351 406 - -
Seca12g02945 1296 Coils Coil 899 919 - -
Seca12g02945 1296 Gene3D Glycoside hydrolase 38, N terminal domain 204 271 IPR027291 -
Seca12g02945 1296 Gene3D Glycoside hydrolase 38, N terminal domain 47 203 IPR027291 -
Seca12g02945 1296 Pfam Glycosyl hydrolases family 38 N-terminal domain 78 303 IPR000602 GO:0004559|GO:0006013
Seca12g02945 1296 Pfam Glycosyl hydrolases family 38 N-terminal domain 48 69 IPR000602 GO:0004559|GO:0006013
Seca12g02945 1296 SMART Alpha_mann_mid_2 308 382 IPR015341 GO:0004559|GO:0006013
Seca12g02945 1296 FunFam Alpha-mannosidase 270 350 - -
Seca12g02945 1296 Pfam Alpha mannosidase middle domain 308 400 IPR015341 GO:0004559|GO:0006013
Seca12g02945 1296 SUPERFAMILY Galactose mutarotase-like 416 921 IPR011013 GO:0003824|GO:0005975|GO:0030246
Seca12g02945 1296 FunFam Alpha-mannosidase 552 818 - -
Seca12g02945 1296 Gene3D - 841 952 - -
Seca12g02945 1296 Gene3D - 418 529 IPR013780 -
Seca12g02945 1296 SUPERFAMILY Glycoside hydrolase/deacetylase 36 306 IPR011330 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02945 Seca-Chr12 56153323 56168487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02945 14 903 Glycoside Hydrolase AT3G26720 57.188 0.0 1116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02945 K01191 - gmx:100775419 1653.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02945 12 56153323 56168487 Seca12g02945 12 56153323 56168487 ECH