Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02944 ATGGTGCTCGAGGCGACGATGATCTGTATTGACAATTCCGAATGGATGCGTAACGGTGATTACTCTCCTTCTCGATTCCAAGCCCAAGCAGACGCTGTTAATCTTATTTGCGGTGCTAAAACCCAGTCTAATCCTGAAAATACGGTTGGAGTTCTCACGATGGCGGGGAAGGGTGTTCGAGTTTTGGTGACCCCTACCAGCGATTTGGGCAAGATCTTAGCTTGCATGCACGGACTAGAAATAGGTGGTGAGATGAACCTAGCTGCTGGAATTCAGGTAGCCCAACTGGCTCTTAAGCATCGGCAAAATAAGAAGCAGCAGCAAAGGATTATTGTCTTTGCTGGAAGTCCTGTCAAGCATGAGAAGAAAATGTTGGAGATGATTGGGAAAAAGTTGAAAAAGAATAGTGTAGCACTTGACATTGTCAATTTTGGTGAAGAAGATGAGGGGAAGACAGAAAAGCTGGAAGCACTCCTTGCAGCTGTTAACAATAATGATACCAGCCACATGGCTCATGTCCCACCTGGTCCAAATGCTCTTTCTGATGTACTTATAAGCACGCCTATTTTTACTGGTGATGGGGAAGGTGGAAGTGGTTTTGCAGCTGCTGCTGCTGCTGCAGCAGCAGGTGGTGTATCTGGATTTGAGTTTGGTGTGGATCCAAACTTGGACCCGGAATTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAGGAGAGAGCCAGACAGGAAGCAGCTGCAAAAAAGGCTGCAGAGGATGCTTCAAAACAGGAGAAAGGTGGTGAGCAGCAAGCTAGCTCGCAGGATGCAACAATGACTGAGCGTGCCAGTGCAGCAACTTCTGAAGCTGAGACTAAGACAAATGATATGATGGATGATGAGAATGCTCTACTACAGCAGGCCCTTGCAATGTCAATGGATGATCCTGCAATTAACCAAGATACCAGAGATACAGATATGTCTGAAGCAGCTGCAGATGATCCTGAGTTGGCTCTAGCTCTCCAATTGTCAGTAGCAAACAGCACCAAGGACTCAGCAAGCCAGTCAGACATGAGTAAATTGTTGGCAGATCAGTCCTTTGTATCTTCTATCCTTGCATCGCTTCCTGGGGTTGACCCTAATGACCCATCTGTCAAAGATTTGCTGGCCTCCATGCAAAATCAGTCTGAGGTAAGTCTTCTTTTATAG 1185 0.4641 MVLEATMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPVKHEKKMLEMIGKKLKKNSVALDIVNFGEEDEGKTEKLEALLAAVNNNDTSHMAHVPPGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFEFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDASKQEKGGEQQASSQDATMTERASAATSEAETKTNDMMDDENALLQQALAMSMDDPAINQDTRDTDMSEAAADDPELALALQLSVANSTKDSASQSDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQSEVSLLL. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02944 394 SMART VWA_4 2 175 IPR002035 -
Seca12g02944 394 MobiDBLite consensus disorder prediction 242 258 - -
Seca12g02944 394 MobiDBLite consensus disorder prediction 242 290 - -
Seca12g02944 394 FunFam 26S proteasome non-ATPase regulatory subunit 4 3 186 - -
Seca12g02944 394 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Seca12g02944 394 SUPERFAMILY vWA-like 4 174 IPR036465 -
Seca12g02944 394 Gene3D - 220 306 - -
Seca12g02944 394 MobiDBLite consensus disorder prediction 259 284 - -
Seca12g02944 394 FunFam 26S proteasome non-ATPase regulatory subunit 4 homolog 220 306 - -
Seca12g02944 394 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Seca12g02944 394 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Seca12g02944 394 Coils Coil 232 252 - -
Seca12g02944 394 CDD VWA_26S_proteasome_subunit 1 188 - -
Seca12g02944 394 CDD PSMD4_RAZUL 345 389 - -
Seca12g02944 394 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 380 IPR027040 GO:0006511|GO:0008540
Seca12g02944 394 SMART uim 324 343 IPR003903 -
Seca12g02944 394 SMART uim 222 241 IPR003903 -
Seca12g02944 394 SMART uim 292 311 IPR003903 -
Seca12g02944 394 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Seca12g02944 394 Pfam Ubiquitin interaction motif 292 307 IPR003903 -
Seca12g02944 394 Pfam Ubiquitin interaction motif 325 337 IPR003903 -
Seca12g02944 394 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02944 Seca-Chr12 56140301 56144470 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02944 K03029 - gmx:100814594 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02944 12 56140301 56144470 Seca12g02944 12 56140301 56144470 ECH