Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02926 ATGGCTGCTGCGGTTACTGCTGCAGTTTCCTTTCCATCCACCAAGTCCACCTCTCTCACAAGCAGGACCTCCATCGTTGCCCCAGAGAGAGTACTGCTCAAGAAGGCTCCATTGCAATTCAGAGATGTTTGCAACAATGGAAGGGTAGTTTCCATCAGAGCTCAAGTCACCACAGAGACAGAGGCACCTGCTAAGGTTGTAAAAGAATCCAAGAAACAAGAGGAAGGTGTGGTTGTGAACAAGTACAAACCCAAGAACCCATATGTTGGCAGATGCTTGCTCAACACAAAGATCACTGGGGATGATGCTCCTGGAGAGACTTGGCACATGGTCTTCAGCACTGAAGGAGAGATTCCTTACAGAGAAGGGCAATCAATTGGGGTAATTCCAGATGGTATTGACAAGAATGGCAAACCTCACAAACTGAGATTGTATTCCATTGCCAGCAGTGCCATTGGTGACTTTGGAGACTCCAAGACTGTGAGTGTCATGTTATTTCTTTACATTATTATGATCGCTTTCATACAGGTTTCTCTATGCGTGAAGCGGCTAGTGTACACAAATGAAAATGGTGAACTTGTCAAGGGAGTGTGCTCAAATTTCTTGTGTGACTTGAAGCCAGGATCTGAAGTAACAATGACTGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCTAATGCCACCATCATTATGTTGGCAACTGGAACTGGGATTGCCCCATTCCGCTCATTTTTGTGGAAAATGTTCTTTGAGAAGCATGATGATTACAAGTTCAATGGTTTGGCATGGCTCTTCTTGGGTGTCCCCACAAGCAGCTCACTGCTTTACAAGGAGGAATTTGAAAAAATGAAGGAGAAATCACCTGACAACTTCAGGGTTGACTTTGCTGTGAGCAGAGAACAAACAAATGAGAAAGGAGAGAAGATGTACATCCAAACCAGAATGGCTCAATATGCAGAAGAGCTGTGGGAATTACTGAAGAAAGACAACACTTTTGTGTACATGTGTGGACTAAAAGGAATGGAAAAGGGAATTGATGACATAATGGTGTCATTGGCTGCCAGAGACGGCATTGATTGGATTGATTACAAGAAGCAGTTGAAGAAATCAGAGCAATGGAATGTTGAAGTCTATTAA 1143 0.4357 MAAAVTAAVSFPSTKSTSLTSRTSIVAPERVLLKKAPLQFRDVCNNGRVVSIRAQVTTETEAPAKVVKESKKQEEGVVVNKYKPKNPYVGRCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSAIGDFGDSKTVSVMLFLYIIMIAFIQVSLCVKRLVYTNENGELVKGVCSNFLCDLKPGSEVTMTGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKSPDNFRVDFAVSREQTNEKGEKMYIQTRMAQYAEELWELLKKDNTFVYMCGLKGMEKGIDDIMVSLAARDGIDWIDYKKQLKKSEQWNVEVY. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02926 380 FunFam Ferredoxin--NADP reductase, chloroplastic 218 380 - -
Seca12g02926 380 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 310 326 IPR001709 GO:0016491
Seca12g02926 380 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 143 150 IPR001709 GO:0016491
Seca12g02926 380 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 120 130 IPR001709 GO:0016491
Seca12g02926 380 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 232 251 IPR001709 GO:0016491
Seca12g02926 380 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 274 285 IPR001709 GO:0016491
Seca12g02926 380 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 262 271 IPR001709 GO:0016491
Seca12g02926 380 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 334 342 IPR001709 GO:0016491
Seca12g02926 380 PANTHER - 4 380 IPR015701 GO:0016491
Seca12g02926 380 Gene3D - 218 380 IPR039261 -
Seca12g02926 380 CDD CYPOR_like_FNR 80 380 - -
Seca12g02926 380 PIRSF FNR-PetH 173 380 IPR035442 GO:0016491
Seca12g02926 380 PIRSF FNR-PetH 2 166 IPR035442 GO:0016491
Seca12g02926 380 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 221 380 IPR039261 -
Seca12g02926 380 Pfam Oxidoreductase NAD-binding domain 233 347 IPR001433 GO:0016491
Seca12g02926 380 PIRSF Frd-NADP+_RD 173 380 IPR015701 GO:0016491
Seca12g02926 380 PIRSF Frd-NADP+_RD 1 170 IPR015701 GO:0016491
Seca12g02926 380 SUPERFAMILY Riboflavin synthase domain-like 61 224 IPR017938 -
Seca12g02926 380 Gene3D Translation factors 175 217 - -
Seca12g02926 380 Gene3D Translation factors 55 167 - -
Seca12g02926 380 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 85 223 IPR017927 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02926 Seca-Chr12 55357944 55362143 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02926 K02641 - gmx:100802032 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02926 12 55357944 55362143 Seca12g02926 12 55357944 55362143 ECH