Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02838 ATGTCAATTTGTCCACTTTCTGAGTCCTGTCATAGGGTGGACAAAGAGGCATTACTCCAATTCAAGAGCAAGATCATCTCTGACCCTTCAAAACTTCTCCATTCTTGGACAACTTCCTCTAATTGCTGTCATGATTGGGAAGGTGTAGCATGTGATCCTTCCAAAGGTAGGGTTGTCAACCTCACTCTCACTGGCACTTTAATAAATAAAGGCACCCCATTTGAGACATACATGATTGGAACATTATCACCTTATCTTGGAAACTTATCTTTTCTCCAAGTTTTGGATCTCAGCTATCTTAAGAGGTTGCATGGTCCAATACCTGCTGAATTGGCAAGGTTATCTCACCTGAGACAACTTTTTCTCTATTCAAACCAACTCACAGGTGGTATACCAACAACATTCAGTAAGCTTTCCAAGCTTGAGATGTTGTACCTTGACAACAATCACTTATCTGGCAATGTTCCTTCTTCTGTGTTTGATTCTATGAAATCTCTCATAGAACTTGATCTTTCTATGAATAGTCTATCTGGTGGGATTCCACCTTCCCTTGGAAGTTTGAAGTTTCTCATCAGGCTTGATCTTCACCAAAATAATTTCCATGGAAGTATTCCTGCAAGCATTGGCAATCTCAGAAATCTAAGAGTTTTAGATCTCTCTAATAATCAGATTAGTGGGAGAATTCCAGAGTCAATTGGAAATCTTGCACAATTAGTCTCACTAGATATGATGCATAACAGGATTGTTGGAAGCCTTCCTTTTTCTATAGGTGGCCTAAGTTCTCTAAAGTTTTGCAGGTTATCAGAAAACATGCTAACAGGAATTCTACCTTCTTCCACTGGAAAGCTCAAGAACTTGCAAACACTAGTTCTTGAGAAGAACAAGCTCACTGGGAACTTGCCTAATGCCATTGGCTATCTAACCATTTTAACTGACTTATTTCTTGCAAACAACAAATTTACAGGGAAAGTTCCACCTACCTTTGGCAATTTAATCAACCTTGAAACACTTGATTTGTCAAGCAATGCATTCAGGGGGGAACTGCCAAAGTCCATTGGAAACATGACTAAACTTTACACCCTGAAAATGTCTAGAAATGAATTTCATTCATCACTCCCAGTAGAATTCAAAAACCTCTTTCGACTAAAGGACCTTGACCTCCATTCCAACAAGCTCACTGGCACTCTTAATGTGATATTTCAGAAAAAATCTCAATCTTCCCAAGGCCATTTCAATTCCATTGACCTATCTAACAACATGTTCTCTGGTCCCATTGATCAAAACATTGGAAAAATGGTCTCCATGACCTCAATCACATCCCTTGTTTTGTCACACAACCCATTGGGAGGATCTATACCCAAGTCAATTGGGAACCTAAAAGAACTAGAGATTCTGCAATTTGATGATTGTAAGCTATCAGGGAAAATACCTACAGAGCTTGGTGATGCTGAATCATTAGCAAAGATTCATCTTTCAAAGAACCTATTAACTGGAAACATACCAGAAAAGGTCCTAAGTTTGAAGAAGCTTCAAGAGTTCGATGTGTCAAGGAACAGACTCAAAGGGAGGATCCCTCCACATAAGGCCAAGATTCCAATATCAGGTTTTTTGGGTAATAGTGGATTGTGTGGGTCACCACTTCCTCCTTGTAAGTCTTTTTAG 1662 0.3929 MSICPLSESCHRVDKEALLQFKSKIISDPSKLLHSWTTSSNCCHDWEGVACDPSKGRVVNLTLTGTLINKGTPFETYMIGTLSPYLGNLSFLQVLDLSYLKRLHGPIPAELARLSHLRQLFLYSNQLTGGIPTTFSKLSKLEMLYLDNNHLSGNVPSSVFDSMKSLIELDLSMNSLSGGIPPSLGSLKFLIRLDLHQNNFHGSIPASIGNLRNLRVLDLSNNQISGRIPESIGNLAQLVSLDMMHNRIVGSLPFSIGGLSSLKFCRLSENMLTGILPSSTGKLKNLQTLVLEKNKLTGNLPNAIGYLTILTDLFLANNKFTGKVPPTFGNLINLETLDLSSNAFRGELPKSIGNMTKLYTLKMSRNEFHSSLPVEFKNLFRLKDLDLHSNKLTGTLNVIFQKKSQSSQGHFNSIDLSNNMFSGPIDQNIGKMVSMTSITSLVLSHNPLGGSIPKSIGNLKELEILQFDDCKLSGKIPTELGDAESLAKIHLSKNLLTGNIPEKVLSLKKLQEFDVSRNRLKGRIPPHKAKIPISGFLGNSGLCGSPLPPCKSF. 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02838 553 FunFam LRR receptor-like serine/threonine-protein kinase 164 232 - -
Seca12g02838 553 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 326 553 - -
Seca12g02838 553 ProSiteProfiles Leucine-rich repeat profile. 213 235 IPR001611 GO:0005515
Seca12g02838 553 Gene3D Ribonuclease Inhibitor 235 553 IPR032675 -
Seca12g02838 553 PRINTS Leucine-rich repeat signature 166 179 - -
Seca12g02838 553 PRINTS Leucine-rich repeat signature 211 224 - -
Seca12g02838 553 Pfam Leucine rich repeat 110 151 IPR001611 GO:0005515
Seca12g02838 553 Pfam Leucine rich repeat 192 248 IPR001611 GO:0005515
Seca12g02838 553 Pfam Leucine rich repeat 285 343 IPR001611 GO:0005515
Seca12g02838 553 FunFam Nuclear pore complex protein NUP107 11 163 - -
Seca12g02838 553 Pfam Leucine Rich Repeat 165 187 IPR001611 GO:0005515
Seca12g02838 553 Pfam Leucine rich repeat N-terminal domain 14 52 IPR013210 -
Seca12g02838 553 SUPERFAMILY L domain-like 155 396 - -
Seca12g02838 553 SMART LRR_typ_2 259 282 IPR003591 -
Seca12g02838 553 SMART LRR_typ_2 331 355 IPR003591 -
Seca12g02838 553 SMART LRR_typ_2 138 162 IPR003591 -
Seca12g02838 553 SMART LRR_typ_2 379 402 IPR003591 -
Seca12g02838 553 SMART LRR_typ_2 283 307 IPR003591 -
Seca12g02838 553 SMART LRR_typ_2 211 235 IPR003591 -
Seca12g02838 553 SMART LRR_typ_2 114 137 IPR003591 -
Seca12g02838 553 SMART LRR_typ_2 507 538 IPR003591 -
Seca12g02838 553 SMART LRR_typ_2 435 459 IPR003591 -
Seca12g02838 553 SMART LRR_typ_2 163 187 IPR003591 -
Seca12g02838 553 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 8 437 - -
Seca12g02838 553 SMART LRR_sd22_2 211 237 - -
Seca12g02838 553 SMART LRR_sd22_2 114 140 - -
Seca12g02838 553 SMART LRR_sd22_2 283 302 - -
Seca12g02838 553 SMART LRR_sd22_2 507 535 - -
Seca12g02838 553 SMART LRR_sd22_2 435 461 - -
Seca12g02838 553 SMART LRR_sd22_2 331 357 - -
Seca12g02838 553 SUPERFAMILY L domain-like 29 201 - -
Seca12g02838 553 FunFam Piriformospora indica-insensitive protein 2 233 322 - -
Seca12g02838 553 Gene3D Ribonuclease Inhibitor 13 100 IPR032675 -
Seca12g02838 553 Gene3D Ribonuclease Inhibitor 101 161 IPR032675 -
Seca12g02838 553 Gene3D Ribonuclease Inhibitor 162 234 IPR032675 -
Seca12g02838 553 SUPERFAMILY L domain-like 413 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02838 Seca-Chr12 51606163 51607824 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02838 74 550 Receptor kinase-like Gene Family AT5G46330 33.081 1.04e-67 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02838 - - gmx:102664464 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02838 12 51606163 51607824 Seca12g02838 12 51606163 51607824 ECH