Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02825 ATGTCAATGAACGTTAATGACATGGAGATTGTCCTCTCTATAGTGAAAAATGCTGGCTACAGTGAAGTTGTGAGTGTTCCTGAGAGTGCGGAAATCATATTCATCAACACTTGTGCCATCAGGGACAATGCAGAACAAAAAGTGTGGCATAGGCTTAATTACTTTTGGTTTCTTAAGAGGAATTGGAAGAGCAATGTTGCTAGTGGAAGGTCACAGTCCCTGCACCCTCCGAGAGTTGTTGTTTTAGGATGTATGGCTGAGAGGTTGAAGGAGAAGATTCTGGATGCAGACAAAATGGGTGATGTGGTTTGTGGTCCTGATGCTTATAGGGATTTGCCACGATTGCTGGAAGAGGTTGATTATGGCCAGAAGGGGATTAATACTCTTCTTTCACTTGAGGAGACTTATGCTGATATTAATCCGGTTAGAATCTCTAAGAACTCGGTTACTGCTTTTGTCTCAGTGATGAGGGATTGCAATAACATGTGCTCATTTTGTATTGTACCTTTCACTAGAGGCAGGGAGCGGTCACGGCCTGTGGATTCTATTGTGAGAGAGGTGGGAGAGCTTTGGAAAGAGGGTGTGAAAGAAGTCACACTTCTTGGCCAAAATGTGAATAGCTACAATGATGTATCAGGGATTGGGGAAGAGGTTGAACCAGGGTCCAATTGGAAACTGAGTGAAGAAGGATTTTCCAGCATGTGTAAGGTTAAAAAAATGGGCTCAAGGTTTTCTGATCTGCTGGAACGACTCTCCTCTGAATTTCCAGAGATGCGATTCAGATTCACTTCTCCGCATCCTAAAGATTTTCCAGATGACTTACTTTATCTCATGCGAGAAAGACATAATATATGCAAAATTATACATTTGCCTGCACAAACTGGAAGTAGCACAGTGCTTGAGAGAATGAGACGAGGTTATACTCGAGAAGCTTACTTGGATCTTGTACAAAAAATACGGAGCATTGTTCCAGATGTGAGCTTAAGCAGTGATTTCATTTGTGGATTTTGTGGAGAAACAGAGGAGGAACATTCAGACACATTGACTCTCATAAGAGCTGTTGGTTATGATATGGCATTCATGTTTGCTTATAGCATGAGGGAGAAAACCCATGCAAACAGAAATTATGATGATGATGTTCCTGAGGAAATAAAGCACAGGAGGCTAACTGAACTTATTGAAGCTTTCCATCAGAGTTCAGGACAATGTTTCTATCCTCAAATTGGAACTACACAGCTTGTATTAGTTGAAGGGCCAAATAAGAAAGCTCCAGACACTGAACTTATGGGCAAGAGTGACAGGGGCCATTGGGTTTTCTTTTCTAATCTGCCAATCCCAGATAAAGAAGATGGTACTAGGAAGCGCAATCCTGTGGTTGGTGATTATGTTGAAGTCCGCATATCATGA 1407 0.4186 MSMNVNDMEIVLSIVKNAGYSEVVSVPESAEIIFINTCAIRDNAEQKVWHRLNYFWFLKRNWKSNVASGRSQSLHPPRVVVLGCMAERLKEKILDADKMGDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADINPVRISKNSVTAFVSVMRDCNNMCSFCIVPFTRGRERSRPVDSIVREVGELWKEGVKEVTLLGQNVNSYNDVSGIGEEVEPGSNWKLSEEGFSSMCKVKKMGSRFSDLLERLSSEFPEMRFRFTSPHPKDFPDDLLYLMRERHNICKIIHLPAQTGSSTVLERMRRGYTREAYLDLVQKIRSIVPDVSLSSDFICGFCGETEEEHSDTLTLIRAVGYDMAFMFAYSMREKTHANRNYDDDVPEEIKHRRLTELIEAFHQSSGQCFYPQIGTTQLVLVEGPNKKAPDTELMGKSDRGHWVFFSNLPIPDKEDGTRKRNPVVGDYVEVRIS. 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02825 468 SMART MiaB 149 394 IPR006638 GO:0003824|GO:0051536
Seca12g02825 468 Gene3D - 2 135 IPR038135 -
Seca12g02825 468 NCBIfam MiaB/RimO family radical SAM methylthiotransferase 2 442 IPR005839 GO:0006400|GO:0016740|GO:0051539
Seca12g02825 468 ProSiteProfiles Radical SAM core domain profile. 145 402 IPR007197 GO:0003824|GO:0051536
Seca12g02825 468 FunFam CDK5 regulatory subunit-associated protein 1 147 406 - -
Seca12g02825 468 ProSiteProfiles TRAM domain profile. 405 468 IPR002792 -
Seca12g02825 468 Pfam TRAM domain 407 467 IPR002792 -
Seca12g02825 468 SFLD B12-binding domain containing 75 355 - -
Seca12g02825 468 SUPERFAMILY Radical SAM enzymes 143 399 - -
Seca12g02825 468 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 1 121 IPR013848 GO:0035596|GO:0051539
Seca12g02825 468 PANTHER CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 3 467 - -
Seca12g02825 468 SFLD CDK5RAP1 2 467 - -
Seca12g02825 468 FunFam CDK5 regulatory subunit-associated protein 1 1 135 - -
Seca12g02825 468 SFLD methylthiotransferase 2 467 IPR005839 GO:0006400|GO:0016740|GO:0051539
Seca12g02825 468 Gene3D tm_1862 like domain 147 404 IPR023404 -
Seca12g02825 468 Pfam Uncharacterized protein family UPF0004 2 105 IPR013848 GO:0035596|GO:0051539
Seca12g02825 468 Pfam Radical SAM superfamily 153 350 IPR007197 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02825 Seca-Chr12 50960300 50965386 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02825 - - gmx:100812447 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02825 12 50960300 50965386 Seca12g02825 12 50960300 50965386 ECH