Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02800 ATGAGGTACTCGCGGTTCATGCACTTATTAAGTCTCCGAAAAACCCTAACCCAAAACCCTAAATTCGCTTCTCCCCCAATTTCGAGAACCTACTTTGTCGCACTAAATCGTCATCCTCATCGATCGAATTCGAATCCCCAATGCCGTTCCGTCTTCGCGCACGATTACAACACCGCCTCGAAGGATTCTGAGAAGGTTTCGGCGATCGTGGACGAGCTCATGGGACTGACGCTGCTGGAAGTGGTGGACCTTGTCGATGTGATTCGCGAGAAGAAGGGCATCAACGAGCTTCCCATCATGATGCTGATGGTGCCCGGAATGGGAATAAGGGGCGTGCCTAGGGGTGCCACGAAGGGTGGAGGCGGAGGAGTAGGAACAGGAGGAGAAGAGAAGAAGGCTGAAAAAACGGCTTTTGATGTGAAGCTTGATGGTTTTGATGCTGCGTCGAAGATCAAGGTCATCAAAGAAGTGAGGACGTTTACCAGCTTGGGGTTGAAGGAGGCCAAGGATTTAGTGGAGAAAGTGCCAACTGTTTTGAAGAAAGGTGTGACTAAGGAAGAGGCAGAGACTATTATTGCCAAGATGAAAGAGGTTGGCGCAAAAGCTTCTATGGAATAA 618 0.4951 MRYSRFMHLLSLRKTLTQNPKFASPPISRTYFVALNRHPHRSNSNPQCRSVFAHDYNTASKDSEKVSAIVDELMGLTLLEVVDLVDVIREKKGINELPIMMLMVPGMGIRGVPRGATKGGGGGVGTGGEEKKAEKTAFDVKLDGFDAASKIKVIKEVRTFTSLGLKEAKDLVEKVPTVLKKGVTKEEAETIIAKMKEVGAKASME. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02800 205 Gene3D Single helix bin 65 134 IPR036235 GO:0003735|GO:0005840|GO:0006412
Seca12g02800 205 Pfam Ribosomal protein L7/L12 dimerisation domain 65 103 IPR008932 GO:0003735|GO:0005840|GO:0006412
Seca12g02800 205 Gene3D - 135 204 IPR014719 -
Seca12g02800 205 Pfam Ribosomal protein L7/L12 C-terminal domain 138 204 IPR013823 GO:0003735|GO:0006412
Seca12g02800 205 CDD Ribosomal_L7_L12 64 204 IPR000206 GO:0003735|GO:0005840|GO:0006412
Seca12g02800 205 FunFam 50S ribosomal protein L7/L12 134 205 - -
Seca12g02800 205 SUPERFAMILY Ribosomal protein L7/12, oligomerisation (N-terminal) domain 65 140 IPR036235 GO:0003735|GO:0005840|GO:0006412
Seca12g02800 205 Hamap 50S ribosomal protein L7/L12 [rplL]. 63 205 IPR000206 GO:0003735|GO:0005840|GO:0006412
Seca12g02800 205 SUPERFAMILY ClpS-like 134 204 IPR014719 -
Seca12g02800 205 PANTHER 39S RIBOSOMAL PROTEIN L12 45 205 IPR000206 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02800 Seca-Chr12 49564402 49565252 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02800 K02935 - gmx:100775592 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02800 12 49564402 49565252 Seca12g02800 12 49564402 49565252 ECH