LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g02743	ATGGAGAAGCTGGCTTTTTGCGCAGCTTCAACCGTAACTGTTCCCACACAACAATTCCCATTTCAAATTCAACACTCTCTCTTTGGCTTCACCACTCGAACGCCCTTCCACCGAAACCGAACCGAACCGTCTTCACACCTTTGTTGTAGAAGTAGGCACCGTCACTTCGAAGCATTCGCCAACAAACAAACACAGCTCTTGGTCCGCGAAGAACCACAAGAAGAACAACAAGAATTTGACGATGACACGTCCTTCTTGTCCCTCAGCGAGAAGCCTGACAGGAACATGGCCTTGCTCGACGATTACGAGACCGAGGAGCTCGATTTTGATTGTGGACCCGACCACAAAAGCGGATATGTGGCTTTACTTGGCAAGCCAAATGTTGGGAAGAGTACACTAGCAAACCAAATGATTGGCCAAAAGTTGTCGATAGTTACAGATAAACCTCAAACAACAAGGCATCGTATTCTATGTATATGTTCTGGCTCAGATTATCAGATGATACTTTATGACACGCCTGGTGTTCTACAGAAGGAAATGCACATGTTAGACTCAATGATGATGAAAAATGTTCGCAATGCTACAGTTAATGCTGACTGTGTATTGGTTCTCGTTGATGCATGTAAAGCGCCTGAAAAAATTGATGAACTGTTGGAAGAAGGCATAGGAGACCTCAAAGATAAAATCCCCACTCTACTGATTCTGAACAAGAAGGATCTTATCAAACCTGGTGAAGTTGCAAAGAAACTTGAGTGGTATGAGAAATTTACCAATGTTGATGAGGTTATACCAGTTAGTGCCAAATATGGTCATGGGGTTGAAGATGTCAAGGACTGGATACTGTCGAAGCTTCCTAATGGACCAGCTTATTATCCAAAGGCATGTATACATACTTATCTTAATGCTGTTCTGAATTCACAGGACATTGTCAGTGAGCATCCAGAAAGATTTTTTGTAGCTGAAATTGTCAGAGAAAAGATTTTTATGCAATATCGAAATGAAATTCCCTATGCATGTCAGGTGAATGTTGTAAGCTATAAGGCTCGGCCGAATGCAAAAGAGTTCATACAAGTGGAGATTTTGGTTGAGAAAAACTCACAGAAGATTATCATTATTGGAAAAGAAGGAAAGGCTTTGAAACTGCTTGCAACAGCTGCCCGTCTTGACATAGAAGATTTTCTACAGAAGAAAGTTTATCTAGAGATTGAAGTGAAGGTTAGAGAAAATTGGCGACAAGACGAAGGGCTGCTTAAACACTATGGTTATGGGGGTCAGATACGTGTTATATGA	1290	0.4163	MEKLAFCAASTVTVPTQQFPFQIQHSLFGFTTRTPFHRNRTEPSSHLCCRSRHRHFEAFANKQTQLLVREEPQEEQQEFDDDTSFLSLSEKPDRNMALLDDYETEELDFDCGPDHKSGYVALLGKPNVGKSTLANQMIGQKLSIVTDKPQTTRHRILCICSGSDYQMILYDTPGVLQKEMHMLDSMMMKNVRNATVNADCVLVLVDACKAPEKIDELLEEGIGDLKDKIPTLLILNKKDLIKPGEVAKKLEWYEKFTNVDEVIPVSAKYGHGVEDVKDWILSKLPNGPAYYPKACIHTYLNAVLNSQDIVSEHPERFFVAEIVREKIFMQYRNEIPYACQVNVVSYKARPNAKEFIQVEILVEKNSQKIIIIGKEGKALKLLATAARLDIEDFLQKKVYLEIEVKVRENWRQDEGLLKHYGYGGQIRVI.	430

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g02743	429	Gene3D	-	311	426	IPR015946	-
	Seca12g02743	429	NCBIfam	GTPase Era	118	405	IPR005662	GO:0003723\|GO:0005525
	Seca12g02743	429	NCBIfam	small GTP-binding protein domain	119	279	IPR005225	GO:0005525
	Seca12g02743	429	PANTHER	GTPASE ERA	68	414	IPR005662	GO:0003723\|GO:0005525
	Seca12g02743	429	CDD	KH-II_Era	320	406	-	-
	Seca12g02743	429	Pfam	50S ribosome-binding GTPase	120	237	IPR006073	GO:0005525
	Seca12g02743	429	CDD	Era	115	284	IPR030388	GO:0005525
	Seca12g02743	429	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	120	331	IPR027417	-
	Seca12g02743	429	Gene3D	-	113	296	IPR027417	-
	Seca12g02743	429	FunFam	GTPase Era	311	425	-	-
	Seca12g02743	429	Hamap	GTPase Era [era].	115	422	IPR005662	GO:0003723\|GO:0005525
	Seca12g02743	429	ProSiteProfiles	Era-type guanine nucleotide-binding (G) domain profile.	116	286	IPR030388	GO:0005525
	Seca12g02743	429	ProSiteProfiles	Type-2 KH domain profile.	331	408	IPR004044	GO:0003723
	Seca12g02743	429	FunFam	GTPase Era	113	296	-	-
	Seca12g02743	429	Pfam	KH domain	334	411	IPR004044	GO:0003723
	Seca12g02743	429	SUPERFAMILY	Prokaryotic type KH domain (KH-domain type II)	307	422	IPR009019	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g02743	Seca-Chr12	48139603	48144724	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g02743	K03595		-	gmx:100815820	659.833

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca12g02743	12	48139603	48144724	Seca12g02743	12	48139603	48144724	ECH