Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02689 GAGAATATTGGTGTTTTTGTGGACCAAAATGGGAAACTTCGTCCAGATGGTAGGATTTGTTGGTTAGAGGCCCCAACAGAAGTTGTAATTCAAAAGCCATATGCTATAGCATTGTTGCCTAGATTTGTGGAGATTCGATCTCTCCGAGCTCCATATCCACTGATACAAACAATAGTTCTTCGAAATGTACGCCATCTTTGCCAAAGCAATAATTATGTGATTCTTGCTTTGGAGAATTCTGTTCATAGCCTCTTTCCTGTTCCTCTTGGAGCCCAGATTGTCCAACTAACAGCTGCTGGTAACTTTGAAGAAGCCTTGTCATTGTGCAAGCTCCTTCCACCTGAAGATTCAAATCTTCGTGTTGCAAAGGAGGGTTCAATTCATATAAGATATGCCCACTATCTTTTTGATAATGGCAACTATGAGGAGGCAATGGAACATTTTATAGCATCTCAAATAGATATAACTTATGTGCTTTCTCTATATCCATCCATTATCCTTCCAAAGACAACTATTGTTCAAGATCCAGATAAGTTGATGGACATTTTTGGGGATGTTTTACATCTTTCCAGAGGTTCTTCGACTAAGTCAGATGATACAGAGCCCTCTCCAGTATCTCATATGTCAGAATCTGATGAGAATACAGAACTTGAGTCCAAAAAGATGAGCCATAATATGCTTGTGGCTCTCATAAAATTTTTACAAAAGAAGAGATATAGTGTTATCGAGAAGGCCACTACAGAGGGAACAGAGGAAGTTGTTTTAGGTGCAGTGGGGGATAACTTTTCATCCTACAATAATAGTAGGTTTAAGAAAATAAATAAGGGGCATGGTAGTACACCAATTAGTTCAGAAGCTCGGGAGATGGCTTCAATATTGGATACTGCTCTACTCCAAGCATTTATACTTACTGGACAATCTTTTGCGGCTGAAGATTTACTAAGAAGTCTTAACTATTGTGATCTAAAAATATGTGAAGATATACTTAAAGAAGGAAACTATCATGCTGCTTTGGTAGAACTTTACAAGTGCAACTCAATGCATCGGGAAGCCCTTGAACTTATTAATAAATTAGTGAAAGACTTAAAGACTAGCCAGATTGAGATTACACATAGGTTCAAGCCTGAGGCCATCATTGGGTATCTCAAGCCGCTGTGTGAAACTGACCCCACACTTGTTTTAGAGTTCTCAATGCTTGTTCTTGAAAGTTGCCCAACCCAAACTATTGAGCTTTTTTTGTCTGGAAATATTCCAGCAGATATGGTGAACACATATTTGAAGCAACATGCTCCAAACTTGCGAGCTACTTACTTGGAGCTCATGCTTGCAATGAATGGGGATGCCATATCTGGAAATTTGCAAAGTGAAATGGTACACATCTATCTTTCTGAAGTACTTGATTGGCATGCTAATTTAAGTTCTCAATCAAAATGGGATGAGAAAGTGTATTCCCCCAAACGGAAAAAATTATTGTCTGCCTTGGAGAGTATATCAGGATACAATCCAGAGGCTCTACTGAAATGTCTTCCATCAGATGCTTTATATGAAGAGCGTGCAATATTGTTGGGAAAAATGAACCAACATGAACTAGCATTATCTTTGTATGTTCATAAGCTTCATGTTCCAGAACTGGCATTGTCTTATTGTGATCGGGTGTATGAGTCCATATGTAAGCCTTCTGTAAAATCTCCTAGCAACATATACCTAATGCTTCTACAAATCTATTTGAATCCACGGAGGACAACCAAGAACTATGAGAAGAGAATTACAAATCTATTATCCCCTCGAAGTGCAACCATTCCAAAGGTTATAAGTTCAAAAACATTATTAAAAACTAAAAGTCGAGGATCAAAGAAAATTGCTGCAATAGAGGTTGCAGAGGACACAAAAGCTAGTTTGAGTAGCATTGACAGTGGCAGGAGTGATGTTGACATAGATGAATGTATTGAGGAAGGAGGTGCTTCAATCATGCTTGATGAGGCCCTTGATCTGTTGAGCCATAGGTGGGATAGAATCAATGGAGCCCAGGCCCTTAAACTTTTACCAAAAGAGACTAAATTGCAGGACTTGCTTCCATTTCTTGGACCTCTTCTGAGAAAATCTAGTGAAATGCATCGTAATTTCTCAGTGATCAAGAGCTTGAGACAGAGTGAGAACCTTCAGGTGAAAGATGAACTCTACAATAAGAGAAAAGCAATTATGAAGATTAATAGTGATAACATGTGTTCCTTATGCAATAAGAAAATAGGGACTAGTGTTTTTGCAGTCTACCCAAATGGGAAAACTCTAGTGCACTTTGTCTGTTTCAGAGATTCTCAGAGTATGAAAGTTGTGGCCAAAGGGTCTCCATTGAAAAAACCATATTGA 2367 0.3853 ENIGVFVDQNGKLRPDGRICWLEAPTEVVIQKPYAIALLPRFVEIRSLRAPYPLIQTIVLRNVRHLCQSNNYVILALENSVHSLFPVPLGAQIVQLTAAGNFEEALSLCKLLPPEDSNLRVAKEGSIHIRYAHYLFDNGNYEEAMEHFIASQIDITYVLSLYPSIILPKTTIVQDPDKLMDIFGDVLHLSRGSSTKSDDTEPSPVSHMSESDENTELESKKMSHNMLVALIKFLQKKRYSVIEKATTEGTEEVVLGAVGDNFSSYNNSRFKKINKGHGSTPISSEAREMASILDTALLQAFILTGQSFAAEDLLRSLNYCDLKICEDILKEGNYHAALVELYKCNSMHREALELINKLVKDLKTSQIEITHRFKPEAIIGYLKPLCETDPTLVLEFSMLVLESCPTQTIELFLSGNIPADMVNTYLKQHAPNLRATYLELMLAMNGDAISGNLQSEMVHIYLSEVLDWHANLSSQSKWDEKVYSPKRKKLLSALESISGYNPEALLKCLPSDALYEERAILLGKMNQHELALSLYVHKLHVPELALSYCDRVYESICKPSVKSPSNIYLMLLQIYLNPRRTTKNYEKRITNLLSPRSATIPKVISSKTLLKTKSRGSKKIAAIEVAEDTKASLSSIDSGRSDVDIDECIEEGGASIMLDEALDLLSHRWDRINGAQALKLLPKETKLQDLLPFLGPLLRKSSEMHRNFSVIKSLRQSENLQVKDELYNKRKAIMKINSDNMCSLCNKKIGTSVFAVYPNGKTLVHFVCFRDSQSMKVVAKGSPLKKPY. 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02689 788 Pfam Vacuolar sorting protein 39 domain 2 662 770 IPR019453 -
Seca12g02689 788 Pfam CNH domain 1 68 IPR001180 -
Seca12g02689 788 PANTHER CNH DOMAIN CONTAINING 1 775 IPR032914 GO:0016192
Seca12g02689 788 MobiDBLite consensus disorder prediction 191 218 - -
Seca12g02689 788 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 396 583 IPR000547 GO:0006886|GO:0016192
Seca12g02689 788 Pfam Vacuolar sorting protein 39 domain 1 293 401 IPR019452 -
Seca12g02689 788 MobiDBLite consensus disorder prediction 203 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02689 Seca-Chr12 46493345 46505140 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02689 K20183 - gmx:100805342 1215.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02689 12 46493345 46505140 Seca12g02689 12 46493345 46505140 ECH