Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02668 ATGGGAGACTTCAACAATGATCCTCTCATGCGCAACCAAAACGCCTCCGTCCAGGCCCGCACCAAAGCCCAGAACCGCGCCAACGTCCTTCAGCTCAAGCTAATTGGGCAGAGTCACCCAACTGGTCTTACCGCGAGCCTGTTGAAGCTCTTTGAGCCTAGGCCTCCCTTGGAGTATAAACCTCCTCCGGAGAAAAGAAAATGTCCGCCGCTATCAGGTATGGCACAATTCGTGAGTAAGTTTGCTGAACCCGGTGACCCTGAATATGCGCCACCTATACCAGTAGTTGAAACTCCTGTGGAAAGAAGAGCAAGAATACACAAGTTAAGACTAGAGAAGGGAGCAGCAAAGGCTGCTGAGGAGCTTGAGAAATATGATCCACAAAATGACCCAAATATATCAGGAGATCCATACAAGACATTGTTTATGGCCAAACTCAGTTATGAGACCACTGAAAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTGCAATCAAACGGGTAGGTATTTTGAATATACCCATAGGGGTTCGGGTTCGATTGGTCACTGATACTGTGACAAATAAGCCCAAGGGTTATGCATTCATTGAATACCTGCACACAAGGGACATGAAAGCCGCTTATAAACAAGCTGATGGTAGGAAAATTGAGGGTAGAAGGGTGCTTGTGGATGTTGAACGTGGGAGAACTGTTCCAAATTGGCGTCCTCGCCGTCTAGGTGGTGGGCTTGGTACTACTAGAGTTGGGGGCGAAGAAGTTAATCAGCGACATTCTGGGAGGGAGCAACAGCAGTCAGGACCTTCTCGTTCTGAAGAACCCAGAGTGCGAGAGGATCGACATGGTGATCGGGACAGAGAAAAGTCACGTGAAAGAGGGAAGGACAGGGAGAGAGAACGGGAGCGATCACGTGAACGCTCTAGTGACAGGGCAAGGGATCGTGATCATAGAGAGGATAGGCACCACAGAGATCGTGATAGGAACAGGGACAGAGATAGGGAAAGGGATAGAGAGAGGGATTGTGGACGTGATCGTGATAGAGCACGAGATCGTGATCGTGGTCGGGAACGTGATCATGATCACCGAGAACATGATCGGCATCGTGAAAGGGATAGAGATTATGAAGTTGGGGAAACTGATAGGGGACGCTCACATGATAGGGAGACTGATTATGATCATGTTGAAATTAAACATGAGAAGGAACGTCATGGTGAGAGAGAGCGTGACTATGAACATGAGGATGATCGTGGGTGGTACGGGCAACCTGGGCATGGGCATAGGCATGCAGATCCTGACCATGATCCTGATCACTATGAGCATCACCGAGGACGGGGGCAGTATGATGATGGAGATGACCGTAGTGATCATTACAATCAATATCCTGATCATGATAGGATGGAAGATGACTATCGCACTGAACGCGCAACATGTGAATCACGTGAAAGGGAGAGAAATCGTGATGTGGACCGTGAATATCATCGCTCAGAGAGGTCCCATTCTCGGGAATATGATTACTAG 1515 0.4851 MGDFNNDPLMRNQNASVQARTKAQNRANVLQLKLIGQSHPTGLTASLLKLFEPRPPLEYKPPPEKRKCPPLSGMAQFVSKFAEPGDPEYAPPIPVVETPVERRARIHKLRLEKGAAKAAEELEKYDPQNDPNISGDPYKTLFMAKLSYETTESRIKREFESYGAIKRVGILNIPIGVRVRLVTDTVTNKPKGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSGPSRSEEPRVREDRHGDRDREKSRERGKDRERERERSRERSSDRARDRDHREDRHHRDRDRNRDRDRERDRERDCGRDRDRARDRDRGRERDHDHREHDRHRERDRDYEVGETDRGRSHDRETDYDHVEIKHEKERHGERERDYEHEDDRGWYGQPGHGHRHADPDHDPDHYEHHRGRGQYDDGDDRSDHYNQYPDHDRMEDDYRTERATCESRERERNRDVDREYHRSERSHSREYDY. 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02668 504 MobiDBLite consensus disorder prediction 270 504 - -
Seca12g02668 504 MobiDBLite consensus disorder prediction 232 504 - -
Seca12g02668 504 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 42 130 IPR022023 -
Seca12g02668 504 SUPERFAMILY RNA-binding domain, RBD 127 250 IPR035979 GO:0003676
Seca12g02668 504 Gene3D - 126 262 IPR012677 -
Seca12g02668 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 228 IPR000504 GO:0003723
Seca12g02668 504 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 60 335 - -
Seca12g02668 504 SMART rrm1_1 140 224 IPR000504 GO:0003723
Seca12g02668 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 221 IPR000504 GO:0003723
Seca12g02668 504 CDD RRM_snRNP70 138 239 IPR034143 GO:0030619
Seca12g02668 504 FunFam U1 small nuclear ribonucleoprotein 70 kDa 126 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02668 Seca-Chr12 45649667 45654509 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02668 K11093 - gmx:100800903 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02668 12 45649667 45654509 Seca12g02668 12 45649667 45654509 ECH