Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02661 ATGAGATATAGGATTTCATATTTGATGGATGAGATCTGGGAGAGGGCTGTGGAGACGGCGTTAGACGGCGAGAAGGACCACGCCTCCACTCGAACCCTAACCCTAGACGGCGCCGTTAAGTGCGTGCAAGGACGGTTACCTCCTCCGAGCCTTCTAGAGAGGTTCGAGAACCTTCAGCACCTGTCGATTGCAAACGTCGGCGTTTCGTCCCTGGAGCAGTTCCCGAGGCTCCGGAATCTTCAGAAGTTGAACCTCTCTGACAACCGTATCGCCGGCGGCCTTGAGTTTCTGGTCCAAGCCGGGCTCGATTCGCTTCGTGACCTCGATCTCTCCAACAATCGGATTCAGTACATCGAGGATCTCGCGCCACTCGCGCAGGTGAAGCTCGTTTCGCTGGATCTGTATGAGTGTCCCGTGACAAGGGTTAAGGATTATCGATCTAGGGTTTTTGGGTTGATTAAGTCGCTGAAGTTCTTGGATAAGATGGATGCGGAGGGGAATGAGAGGCCAGAGTCCGATGATGAAGAAGAGGATGAAGAAGAGGAGGAGGAAGAAGAAGATGACCCTGGGAGTGGAGAGATTGACGGGGAAGAGGATCGACCCTTTGGGATGAACAACGGGCACAGCGAAGGCGTTGATGGGGTTGTGGATGCTGATGAGGAAGAGGAGAGTGATGCTGATGAGGAAGAGGCGGAGACATCGAGGGGGAGAGTGAATGGGTTGAACCATCAGGAGAATGGATTTCGGGTTGCCCCTGTGGTGGGGGATGATGTGGAGGAAGATGAGGATGATGATGATTCAGGGGAGGAGATTGATGAGGAGGAGGGTGATGATGATGATGTGGTCGAGGTTCATGAGATTGAAGACAGCGATGATGAAGAGGATGGGGTTGAGTATGATGAAGATGATGATGATGAGGATGATGAAGAGGAGGAAGAAGTGGATAATGATGAAGGGGATTTTGCTGAGCCGGAGAGTACTGGACGGTTGACGAGCACTGAAGGAGAGATTGATGGGCATGAGCAAGGGGAGGAAGATGGAGACGAAGATGACAACGGGGAGACCGGTGAAGATGAGATGGGAGTAGATGATGATGGAGAGTTTGAAGATGATGATGAACCAAATATGGATTTTTCACTGCAATCACAGGAAGAAGACTATGGTGCTGGATATCTTGTTCAACCAGTTGGGCAGTCTGAACCTCTAAATGCTGGGGGTGATGCCATGGATGGCGGAAATGATGATGGTGAAGAGGAAGAAGAGGAAGAGGAAGTTGATGATGACGATGATGATGTTCAGGTGTTGCCTCCTGCCTCTTCACAGCACAAGAGGAAAAGGGATGATGAAGATGGAGATGAAGATGAGGACAATGAAGATGATGATGTGGTGGCATTCACAAAATCGTCCAAGAAGCATCATTGA 1422 0.5049 MRYRISYLMDEIWERAVETALDGEKDHASTRTLTLDGAVKCVQGRLPPPSLLERFENLQHLSIANVGVSSLEQFPRLRNLQKLNLSDNRIAGGLEFLVQAGLDSLRDLDLSNNRIQYIEDLAPLAQVKLVSLDLYECPVTRVKDYRSRVFGLIKSLKFLDKMDAEGNERPESDDEEEDEEEEEEEEDDPGSGEIDGEEDRPFGMNNGHSEGVDGVVDADEEEESDADEEEAETSRGRVNGLNHQENGFRVAPVVGDDVEEDEDDDDSGEEIDEEEGDDDDVVEVHEIEDSDDEEDGVEYDEDDDDEDDEEEEEVDNDEGDFAEPESTGRLTSTEGEIDGHEQGEEDGDEDDNGETGEDEMGVDDDGEFEDDDEPNMDFSLQSQEEDYGAGYLVQPVGQSEPLNAGGDAMDGGNDDGEEEEEEEEVDDDDDDVQVLPPASSQHKRKRDDEDGDEDEDNEDDDVVAFTKSSKKHH. 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02661 473 MobiDBLite consensus disorder prediction 163 473 - -
Seca12g02661 473 ProSiteProfiles Leucine-rich repeat profile. 79 98 IPR001611 GO:0005515
Seca12g02661 473 SMART LRR_sd22_2 77 96 - -
Seca12g02661 473 SMART LRR_sd22_2 102 123 - -
Seca12g02661 473 FunFam acidic leucine-rich nuclear phosphoprotein 32-related protein-like 13 175 - -
Seca12g02661 473 MobiDBLite consensus disorder prediction 256 321 - -
Seca12g02661 473 Gene3D Ribonuclease Inhibitor 10 175 IPR032675 -
Seca12g02661 473 PANTHER ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32 19 459 IPR045081 -
Seca12g02661 473 MobiDBLite consensus disorder prediction 339 379 - -
Seca12g02661 473 Pfam Leucine-rich repeat 64 173 - -
Seca12g02661 473 MobiDBLite consensus disorder prediction 169 194 - -
Seca12g02661 473 ProSiteProfiles Leucine-rich repeat profile. 104 125 IPR001611 GO:0005515
Seca12g02661 473 SUPERFAMILY L domain-like 48 164 - -
Seca12g02661 473 MobiDBLite consensus disorder prediction 411 433 - -
Seca12g02661 473 MobiDBLite consensus disorder prediction 215 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02661 Seca-Chr12 45487846 45490856 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02661 - - zju:107424836 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02661 12 45487846 45490856 Seca12g02661 12 45487846 45490856 ECH