Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02644 ATGAGTGCCGTGAATCTCAACACATGGGCACGCCCCAATTTCATGTTCAACCAAGCCACCAGATCCAGATCCCCAACTTTTTATCTCTTCCACGGCCTCAAAAAGTTGCCCATTTCATCCGTTAACACTGCAAAACCGCAAAGGCATCAACTTTGTTATTCTTCTACTTCTTCTTCGGTTTCGGTGGTTTCTGCAGTTCTCACTAAAGAGGACACCCTGGAAGCTGAAGAGAAACCCACCTTCAATTTCAAGTCCTACATGGTTGACAAAGCGACCAGGGTTAACCATGCCCTAAACGACGCCGTTTCGCTTCGGGAACCCCTTAAGATCCACGAGGCTATGCGTTATTCCCTCCTCGCCGGCGGCAAGCGCGTCCGGCCGGTTCTCTGCGTCGCCGCCTGCGAACTCGTCGGCGGAAGCGAAGCGATGGCGATGCCGGCGGCGTGCGCCGTCGAGATGATCCACACCATGTCGCTTATCCACGACGACCTTCCCTGCATGGACAACGACGATCTTCGGCGAGGGAAACCGACGAATCACAAGGTGTTCGGCGAGGACGTGGCGGTGCTCGCCGGCGACGCGCTTCTCGCTTTCGCCTTTGAGCACATCGCCGTCTCCACCGCCGGTGTGTCGCCGGCGAGGATAGTCCGGGCCATCGGAGAGCTCGCGAAGGCCATCGGCTCCGAAGGCCTTGTCGCCGGCCAAGTCGTCGACATCAATTCCGAAGGGTTATCCGATGTGGGACTTGAGAGGCTTGAGTTCATTCACCTTCACAAGACTGCAGCTTTGTTGGAAGGTGCTGTTGTTCTTGGGGCCATTTTGGGTGGTGGTTCTGATGAAGAGGTTGAGAGGTTGAGAAAGTTTGCAAGGTACATAGGGTTGTTGTTTCAAGTAGTTGATGATATCCTTGATGTTACTAAGTCTTCACAGGAATTAGGGAAGACAGCAGGGAAGGACTTGGTAGCTGATAAGGTTACTTACCCTAAGCTTTTGGGGATAGAGAAATCCAAGGAATTTGCTGAGAAATTGAATAAGGATGCACAGGAACAGCTCTCTGGGTTTGATCCTCATAAGGCTGCTCCTTTGATTGCTTTAGCCAATTACATTGCTTACAGGCAAAATTAG 1125 0.5227 MSAVNLNTWARPNFMFNQATRSRSPTFYLFHGLKKLPISSVNTAKPQRHQLCYSSTSSSVSVVSAVLTKEDTLEAEEKPTFNFKSYMVDKATRVNHALNDAVSLREPLKIHEAMRYSLLAGGKRVRPVLCVAACELVGGSEAMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIAVSTAGVSPARIVRAIGELAKAIGSEGLVAGQVVDINSEGLSDVGLERLEFIHLHKTAALLEGAVVLGAILGGGSDEEVERLRKFARYIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSKEFAEKLNKDAQEQLSGFDPHKAAPLIALANYIAYRQN. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02644 374 Gene3D Farnesyl Diphosphate Synthase 75 374 IPR008949 -
Seca12g02644 374 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 46 374 - -
Seca12g02644 374 CDD Trans_IPPS_HT 110 372 IPR000092 GO:0008299
Seca12g02644 374 FunFam Geranylgeranyl diphosphate synthase 80 374 - -
Seca12g02644 374 Coils Coil 330 350 - -
Seca12g02644 374 SUPERFAMILY Terpenoid synthases 83 355 IPR008949 -
Seca12g02644 374 ProSitePatterns Polyprenyl synthases signature 2. 292 304 IPR033749 -
Seca12g02644 374 ProSitePatterns Polyprenyl synthases signature 1. 159 175 IPR033749 -
Seca12g02644 374 Pfam Polyprenyl synthetase 110 344 IPR000092 GO:0008299
Seca12g02644 374 SFLD Polyprenyl Transferase Like 86 372 - -
Seca12g02644 374 SFLD Isoprenoid Synthase Type I 86 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02644 Seca-Chr12 44701107 44703906 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02644 K13789 - gmx:100785539 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02644 12 44701107 44703906 Seca12g02644 12 44701107 44703906 ECH
Seca12g02644 12 44701107 44703906 Seca12g02644 12 44701107 44703906 PCT