Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02637 ATGTCATCTTCTTTCATCACCATCTCCTGTTTTGTCCTCCTCCTCTTCTCCACACACACCACCGCTGAAACCTTCAAGGAAGCACCAAAATTCTACAACTCCCCAACCTGCGCCACCACCATTAATCACCACCCCAATCACACATGCTCTGCCGATGCCGTACACGTGGCAATGACCCTTGACGTGTCCTACATCCGTGGATCCATGGCCGCCATCCTCTCCGTTCTCCAACACTCCTCCTGTCCCGAAAACATCATTTTCCATTTCGTTTCCGCCGCTTCAAAACCTTCCTCTGCCTCCATCCTCAACCGAACGCTAACAACCTCGTTCCCTTATCTGAAATTCCAAATCTACCCCTTCGATGACGGCACAGTCGCCGGCCTCATCTCCACCTCCATCCGTTCCGCCCTGGATTGTCCTCTCAACTACGCTCGTAGCTACCTCGCCAACCTCCTCCCTCTTTGTGTCACCAAAGTTGTCTACCTTGACTCTGACTTGATCCTCGTCGACGACATTGCCAAGCTTGCCGCCACTCCTCTCCGCTCAGACACCATTCTCGCTGCTCCAGAATACTGCAATGCCAACTTCACTAACTACTTTACGCCGTCGTTTTGGTCCAATCCTTCTCTGTCGCTCACATTCGCGAATCGCAGGCCCTGCTACTTCAACACTGGCGTTATGGTCATCGACCTGGAGCGGTGGCGTGCAGGGGACTACACCACCATGATTCAGGAGTGGATGGAGCTTCAGAAGAGAATGAGGATCTATGAGCTGGGATCTCTGCCCCCCTTTTTGTTGGTTTTCGCTGGGAAGATTACGCCGGTGGATCATCAGTGGAACCAGCACGGGCTTGGTGGTGATAACTTCCGCGGGCTTTGCCGGGACTTACATCCCGGCCCGGTGAGCCTGCTGCATTGGAGTGGAAAAGGGAAGCCGTGGGCCAGGCTCGATGCCAATAGGCCTTGCCCTTTGGATGCGTTATGGGCTCCATATGATCTGCTGAAATCTTCTTACCCGCTTGAAGCATAG 1029 0.5364 MSSSFITISCFVLLLFSTHTTAETFKEAPKFYNSPTCATTINHHPNHTCSADAVHVAMTLDVSYIRGSMAAILSVLQHSSCPENIIFHFVSAASKPSSASILNRTLTTSFPYLKFQIYPFDDGTVAGLISTSIRSALDCPLNYARSYLANLLPLCVTKVVYLDSDLILVDDIAKLAATPLRSDTILAAPEYCNANFTNYFTPSFWSNPSLSLTFANRRPCYFNTGVMVIDLERWRAGDYTTMIQEWMELQKRMRIYELGSLPPFLLVFAGKITPVDHQWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARLDANRPCPLDALWAPYDLLKSSYPLEA. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02637 342 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 55 322 IPR029044 -
Seca12g02637 342 Pfam Glycosyl transferase family 8 55 315 IPR002495 GO:0016757
Seca12g02637 342 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 9 336 - -
Seca12g02637 342 SUPERFAMILY Nucleotide-diphospho-sugar transferases 54 333 IPR029044 -
Seca12g02637 342 FunFam Hexosyltransferase 55 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02637 Seca-Chr12 44258315 44259343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02637 1 340 Glycosyltransferase AT3G50760 68.805 7.46e-178 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02637 K20893 - gmx:100783054 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02637 12 44258315 44259343 Seca12g02637 12 44258315 44259343 ECH
Seca12g02637 12 44258315 44259343 Seca12g02637 12 44258315 44259343 PCT