Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02635 ATGGCACCCTCTTATTGTGTGATGGAGAGGAAGCCTTGTGTGAGATGGGTTGAGATATACTTCAAAGACTGCCTTTGCAATTTGAAAGATGAAATCTCATTCGGTTTTGGGCTCACTAGTTTAGTTTTCTGGGGAGTAGCAGAAATTCCTCAAATAATCACCATTTTTCGCACCAAGTCCAACCATGGAGTGTCCCTTGCCTTTCTTCTCACTTGGGTCGCTGGTGATATATGCAACCTGGTGGGATGTCTTCTGGAACCAGCTACGTGGGTGGACATGCAGTTGCCTACACAGCTTTACACAGCTCTGCTTTACACAGCCACTACGATCGTATTAGTACTGCAAATCTTGTATTATGACTACATCCGCAGATGGTACAGACATCGTCAGAAAATCAACCATAAAGGGGCGCATGAAGAAGAGAAAAGGCCATTGAAACCGAAACCAATTTACGAGTCAGGGATTCCAATACCTAATGGTACACCCAAAGCAGCACCTCGTCGGAGTCGGGAGCATTACTATATGTCAGCAAGATCGTTGGCTGGGAGTGCGACTCCACCCTCGATTACCTACATAAGAGCTGCTAAAAGTGGCCCTTCAGCCATGGAATTGAGCAGCGATTCTTCTTCTGATGATGAAGCTTCTACATATTCCTCTGTAACCCAGCCTAGGCCCATCTCACGTTCTTTGGCTGCAAGTTATGGGACATTTCTAGCATCATCCGTTAACTTGCCCCTCAAGAGTAATGCTTTGAGAGAAGGATACATAGGATTTAGTGGAAGAGAGCTCTTGCAGGGGCAAGAGATACATAGTGGTCAATGGTTGGGATGGCTCATGGCTGCTATCTATATTGGTGGTCGGCTTCCTCAAATATGGTTGAATATTAAAAGAGGTAGTGTGGAGGGCTTAAATCCACTCATGTTCGTCTTTGCACTGATTGCTAATGTCACTTACGTGGGAAGTATTGTTGTGCGAGCTACAGATTTGGAAAGTATCAAAGCTAATATGCCATGGTTGCTGGATGCCACGATTTGCGTGGCACTGGACCTTTTTATAATATTGCAGTATATCTACTATAAATACCTCCGAAGGAGGGAAGCAAGTGATGATAGAGACTACGAAGAAGCGACAAAAGCTGCAATATCTTGA 1149 0.4473 MAPSYCVMERKPCVRWVEIYFKDCLCNLKDEISFGFGLTSLVFWGVAEIPQIITIFRTKSNHGVSLAFLLTWVAGDICNLVGCLLEPATWVDMQLPTQLYTALLYTATTIVLVLQILYYDYIRRWYRHRQKINHKGAHEEEKRPLKPKPIYESGIPIPNGTPKAAPRRSREHYYMSARSLAGSATPPSITYIRAAKSGPSAMELSSDSSSDDEASTYSSVTQPRPISRSLAASYGTFLASSVNLPLKSNALREGYIGFSGRELLQGQEIHSGQWLGWLMAAIYIGGRLPQIWLNIKRGSVEGLNPLMFVFALIANVTYVGSIVVRATDLESIKANMPWLLDATICVALDLFIILQYIYYKYLRRREASDDRDYEEATKAAIS. 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02635 382 FunFam Vacuolar membrane PQ loop repeat protein 271 369 - -
Seca12g02635 382 MobiDBLite consensus disorder prediction 202 221 - -
Seca12g02635 382 Gene3D - 271 373 - -
Seca12g02635 382 Gene3D - 35 134 - -
Seca12g02635 382 MobiDBLite consensus disorder prediction 136 168 - -
Seca12g02635 382 FunFam PQ loop repeat family protein 33 129 - -
Seca12g02635 382 SMART ctns 46 77 IPR006603 -
Seca12g02635 382 SMART ctns 285 316 IPR006603 -
Seca12g02635 382 Pfam PQ loop repeat 32 90 IPR006603 -
Seca12g02635 382 Pfam PQ loop repeat 272 326 IPR006603 -
Seca12g02635 382 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 5 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02635 Seca-Chr12 44212674 44218018 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02635 K23678 - gmx:100787660 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02635 12 44212674 44218018 Seca12g02635 12 44212674 44218018 ECH
Seca12g02635 12 44212674 44218018 Seca12g02635 12 44212674 44218018 PCT