Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02634 ATGGCCACCGAGCGAATTCTCAAACCATCAAAGTGGTTTTCTAACAAAGGTCTCAGGCTTAGTCTCCATCGCCGAAAATCAAGATCCTCTAACTCATCTTCAAGCTCTCCAAGATCTCCCATGTCACTATGCACCACTCCCAAGAACATTAACAACAATGGAGGAGAAGGAGATGATGGGTTGAGGGAGGTTTTCCATCACTTTGATAGAGACAGAGATGGGAAAATCTCTGCCTATGAACTAAGGTCATATTTTGGTTCAATTGGAGAGTACATGTCTCATGAGGAAGCTGAAGGGGTGATTCATGACCTTGATGCTGATGGAGACAACTTGTTGGATTTCAATGATTTCATGAAGCTGATGAAAGGGGAGGGATGCAGGCAGTTCAATGATACTGATGAAGATCTTAGAAAGGCTTTTGAGATGTTTGTGTGGGAAAAAGAAGGTGGTGGATGTATCACACCAAAAGGGTTGCAAAGGATGTTAAACCGCCTTGGGGATGATAAGTCATATGATGAGTGTGTGGCTATGATTGATGCCTTTGACACGGATCACAACGGGGTCCTTGATTTCAATGAATTTCACCGAATGATGGCCTAA 600 0.4333 MATERILKPSKWFSNKGLRLSLHRRKSRSSNSSSSSPRSPMSLCTTPKNINNNGGEGDDGLREVFHHFDRDRDGKISAYELRSYFGSIGEYMSHEEAEGVIHDLDADGDNLLDFNDFMKLMKGEGCRQFNDTDEDLRKAFEMFVWEKEGGGCITPKGLQRMLNRLGDDKSYDECVAMIDAFDTDHNGVLDFNEFHRMMA. 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02634 199 SMART efh_1 60 88 IPR002048 GO:0005509
Seca12g02634 199 SMART efh_1 96 124 IPR002048 GO:0005509
Seca12g02634 199 SMART efh_1 173 199 IPR002048 GO:0005509
Seca12g02634 199 MobiDBLite consensus disorder prediction 23 58 - -
Seca12g02634 199 ProSitePatterns EF-hand calcium-binding domain. 105 117 IPR018247 -
Seca12g02634 199 CDD EFh 135 199 IPR002048 GO:0005509
Seca12g02634 199 Pfam EF-hand domain pair 150 198 IPR002048 GO:0005509
Seca12g02634 199 Gene3D - 126 199 - -
Seca12g02634 199 ProSiteProfiles EF-hand calcium-binding domain profile. 169 199 IPR002048 GO:0005509
Seca12g02634 199 CDD EFh 61 122 IPR002048 GO:0005509
Seca12g02634 199 ProSitePatterns EF-hand calcium-binding domain. 69 81 IPR018247 -
Seca12g02634 199 ProSiteProfiles EF-hand calcium-binding domain profile. 56 91 IPR002048 GO:0005509
Seca12g02634 199 ProSiteProfiles EF-hand calcium-binding domain profile. 92 127 IPR002048 GO:0005509
Seca12g02634 199 ProSitePatterns EF-hand calcium-binding domain. 182 194 IPR018247 -
Seca12g02634 199 MobiDBLite consensus disorder prediction 27 53 - -
Seca12g02634 199 FunFam Calmodulin A 38 124 - -
Seca12g02634 199 Pfam EF-hand domain pair 60 122 IPR002048 GO:0005509
Seca12g02634 199 PANTHER CALCIUM BINDING PROTEIN 112 198 - -
Seca12g02634 199 SUPERFAMILY EF-hand 47 198 IPR011992 -
Seca12g02634 199 Gene3D - 45 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02634 Seca-Chr12 44127228 44127827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02634 1 199 EF-hand Containing Proteins AT3G50770 51.185 4.22e-58 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02634 K13448 - gmx:100306370 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02634 12 44127228 44127827 Seca12g02634 12 44127228 44127827 ECH