Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02605 ATGGGCAGAATACTAATGCAGTATCTGGCTATGAAAACGGATCATCCCGTTACGGCTAGTGTAATCCATTCTGATTTAGATGACCTCAAGCATGCAGCCAAGAAGCTCTTCCATGATGCTACTTTGTTAGGAGGCAAAGGCTTTGGTACTTCTTTCCTTAAAGGCCTCGCTTCCTTTGCTGCCATTTATTTACTGATACTGGATCGCACAAACTGGAGGACAAATATGCTGACTTCACTATTAGTGCCTTACATATTCTTCAGTTTTCCCGGGTCACTGTTCCACTTTTTCAGAGGAGAAGTTGGAAAATGGATTGCTTTCATTGCAGTAGTGCTGAGGCTTTTCTTCCCTAGACATTTTCCCGATTGGCTGGAAATGCCTGGATCAATGATCCTTCTTTTGACGGTGGCACCTAATTTGTTTGCTCTGAAGTTTAGGAACAACTGGGTTGGAGTAGCAATTGATCTCTTCATTGGTTGTTACCTACTACAAGAACATATCAGGGCTTCTGGGGGATTCAGAAATTCTTTCACACAGAGACATGGGATATCAAATACTCTTGGCATTCTTGTCCTCATAGTCTATCCTGTTTGGGCATTGGTTATTCATTAA 612 0.4216 MGRILMQYLAMKTDHPVTASVIHSDLDDLKHAAKKLFHDATLLGGKGFGTSFLKGLASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSFPGSLFHFFRGEVGKWIAFIAVVLRLFFPRHFPDWLEMPGSMILLLTVAPNLFALKFRNNWVGVAIDLFIGCYLLQEHIRASGGFRNSFTQRHGISNTLGILVLIVYPVWALVIH. 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02605 203 Pfam Cold acclimation protein WCOR413 11 192 IPR008892 GO:0016020
Seca12g02605 203 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2 7 202 IPR008892 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02605 Seca-Chr12 42778509 42780658 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02605 - - gmx:100817084 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02605 12 42778509 42780658 Seca12g02605 12 42778509 42780658 ECH