Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02168 ATGGCCACGATGCCTCAACCACAACCACCTTCACGTGCCTTTCTGGACACAGTACAAGAAATCACCCGAATCTACAGGTCACTGCCACCTAGACCTTCGCTAGAAGAGGTGGAAGCTGCCACGTCTACTGTAGAAACCGTGAACAACGTGGAGCAAACCAAACTCCACGAAATCTCAATGCAAAAACCCTCCCACGATGTCCCCCAGGACCTTTTCTCTGTTCTACAAGAACTCAAGAAGACCATGGTCTTGTTCCAGAGCCATCAACAGAGGAAAGAGGCCCTTCACCTTCTTGAACTCGAAAAGATGTTTCAGACCTTTGGTGATCTCATTCAGAATGCTTCTCAATTGGTTTCTGGCACTGGAGATACCCAGACCCATAAACAGAAACAAAAACAGAAACTTCCTACTCTATTCGAGGAACCCCTTGAAAAAAATGAAACTTTAGTGAAGAAGGAGGAGGAAGAGGAAGAAGAACCACAGAAGAGTGATTTCGAAGCAGAAAAGGGTTCCTCTGTGCACATGCCGTTCTTGTCAGCAGGTGATGGAAGCTCTGAGAAATTAAGTCTCATGAAAGTGGCTACTGTTATTGAAAGTTGTTCTAAGAGTGGAGCTAACATCCTTGAGCTTAGAGGGAAATTGGTGGATCAGATGGAGTGGTTGCCTGTGTCAATTGGGAAATTATCTGATGTTACTGAAATGGACCTATCTGAAAACAGAATCATGGCTCTTCCAACAACCATTGGGGGTCTCAAGGCCTTAACAAAGCTTGATCTTCATTCAAACCAACTTATAAACCTTCCACAGTCATTTGGTGAATTGATAAACCTTGTTGAGCTTGACCTTCATGCCAACAGATTGAAATCACTTCCTGCTACTTTTGGAAACTTGACAAATCTCATTGATCTTGACTTGAGTTCAAATGAATTCACACAATTACCAGAGACAATTGGGAGTTTAAGCAGCCTGAAGAGATTAAATGTTGAGACAAATGAGCTTGAGGAACTGCCTTATACAATTGGAAATTGCTCCTCACTAGCTGTGCTGAAGTTAGATTTCAATCAGCTCAAGGCCCTTCCTGAGGCAATTGGGAAGCTTGAATGGTTGGAAGTTCTCACTTTGCACTATAATAGGATTAAGAGGTTGCCTTCCACAATGGATAATCTAATGAATCTGAAGGAACTTGATGTTAGCTTCAATGAACTTGAATTTGTACCAGAGAACCTGTGTTTGGCAGTTAATTTGAAGAAATTAAACTTGGGAAAGAACTTTGCAGACCTAAGAGCCTTGCCAAGATCAATTGGAAATCTTGAAATGCTTGAGGAGTTGGATATAAGTGATGATCAAATAAGAGCCCTACCAGAGTCCTTTAGGTTCTTGTCCAAGTTAAGAGTTTTCCGGGCTGATGAGACTCCTCTTGAGGTGCCACCAAGAGAAGTGGTCAAGTTGGGTGCTCAGGAAGTTGTGCAGTATATGGCTGATTTTGTCACCAAGAGGGATGTAAAACTTCTGCCATCAAAGAAGAAAAAGAAGGGATTTTGGTTCTGGTTTTGTTCCATATTTTGCCCTCAGCGGAAATGA 1581 0.4244 MATMPQPQPPSRAFLDTVQEITRIYRSLPPRPSLEEVEAATSTVETVNNVEQTKLHEISMQKPSHDVPQDLFSVLQELKKTMVLFQSHQQRKEALHLLELEKMFQTFGDLIQNASQLVSGTGDTQTHKQKQKQKLPTLFEEPLEKNETLVKKEEEEEEEPQKSDFEAEKGSSVHMPFLSAGDGSSEKLSLMKVATVIESCSKSGANILELRGKLVDQMEWLPVSIGKLSDVTEMDLSENRIMALPTTIGGLKALTKLDLHSNQLINLPQSFGELINLVELDLHANRLKSLPATFGNLTNLIDLDLSSNEFTQLPETIGSLSSLKRLNVETNELEELPYTIGNCSSLAVLKLDFNQLKALPEAIGKLEWLEVLTLHYNRIKRLPSTMDNLMNLKELDVSFNELEFVPENLCLAVNLKKLNLGKNFADLRALPRSIGNLEMLEELDISDDQIRALPESFRFLSKLRVFRADETPLEVPPREVVKLGAQEVVQYMADFVTKRDVKLLPSKKKKKGFWFWFCSIFCPQRK. 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02168 526 SMART LRR_typ_2 251 273 IPR003591 -
Seca12g02168 526 SMART LRR_typ_2 366 388 IPR003591 -
Seca12g02168 526 SMART LRR_typ_2 437 459 IPR003591 -
Seca12g02168 526 SMART LRR_typ_2 344 365 IPR003591 -
Seca12g02168 526 SMART LRR_typ_2 389 412 IPR003591 -
Seca12g02168 526 SMART LRR_typ_2 228 250 IPR003591 -
Seca12g02168 526 SMART LRR_typ_2 320 343 IPR003591 -
Seca12g02168 526 SMART LRR_typ_2 274 296 IPR003591 -
Seca12g02168 526 SMART LRR_typ_2 297 319 IPR003591 -
Seca12g02168 526 SUPERFAMILY L domain-like 216 470 - -
Seca12g02168 526 Pfam Leucine rich repeat 276 333 IPR001611 GO:0005515
Seca12g02168 526 Pfam Leucine rich repeat 345 402 IPR001611 GO:0005515
Seca12g02168 526 Gene3D Ribonuclease Inhibitor 185 500 IPR032675 -
Seca12g02168 526 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 271 346 - -
Seca12g02168 526 FunFam Plant intracellular Ras-group-related LRR protein 4 187 495 - -
Seca12g02168 526 ProSiteProfiles Leucine-rich repeat profile. 276 298 IPR001611 GO:0005515
Seca12g02168 526 SMART LRR_bac_2 274 293 - -
Seca12g02168 526 SMART LRR_bac_2 343 362 - -
Seca12g02168 526 SMART LRR_bac_2 389 408 - -
Seca12g02168 526 SMART LRR_bac_2 251 270 - -
Seca12g02168 526 SMART LRR_bac_2 320 339 - -
Seca12g02168 526 SMART LRR_bac_2 366 385 - -
Seca12g02168 526 SMART LRR_bac_2 297 316 - -
Seca12g02168 526 SMART LRR_bac_2 437 456 - -
Seca12g02168 526 MobiDBLite consensus disorder prediction 127 169 - -
Seca12g02168 526 MobiDBLite consensus disorder prediction 118 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02168 Seca-Chr12 28012924 28015040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02168 221 456 Receptor kinase-like Gene Family AT3G11080 31.474 4.28e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02168 - - lja:Lj0g3v0066329.1 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02168 12 28012924 28015040 Seca12g02168 12 28012924 28015040 ECH