Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02165 ATGGTTCCTAAAGTTCATGCTGGCTTGGAAATGGCAATGGCTGGGAATGAGAGTGACAGAATCATTGGGAATTGGAAGAAACGTATGCATGTTTTTGGTGAAAAGTTTAGGAGGTTCCCTATTATGGCTTGGAAGACTACATGGAAGGTGGGACATGATGACCCAAGAAGGGTGATCCATGCATTCAAAGTTGGTTTATCTTTGACTCTAGTTTCTCTTCTGTATCTGTTGGAGCCACTCTTCAAAGGGATTGGCCAAAATGCTATTTGGGCTGTCATGACAGTGGTGGTGGTGTTTGAGTTCACAGCAGGGGCAACTTTATGCAAAGGGCTCAACAGAGGATTGGGGACACTAATAGCAGGATTACTAGCATTTTTTATTAAGTATGTTGCAAATACATCTGGTCAGGTTGTTCAAGCTGTTTTCATTGGAGCTGCAGTTTTTATAATAGGAACTGCAGCCACTTATATGAGGTTCTTTCCATATATAAAGAAGAATTATGACTATGGTGTGGTTATATTTCTCTTGACCTTCAACTTGTTAACTGTTTCGAGTTACCGGGTTGATAATGTCTTGAAGATTGCACATGATCGCTTCTACACCATAGCCATAGGCTGTGCCGTATGCCTTCTGATGAGTCTATTGATATTTCCAAATTGGTCAGGGGAAGATCTCCACAATTCCACAGCTTTCAAGCTTGAAGGCCTAGCCAAATCTATAGAAGCTTGTGTCAACGAATACTTTTATGGAGAAGTGGAAAACTCTGATGATATAAAATCATCTGAGGACCCCATATACAAAGGTTATAAGGCTGTATTGGATTCAAAATCCACTGATGAAACACTGGCATTACATGCAAGTTGGGAACCAAGGCATTCAAGGTACTGTCATAGATTTCCATGGCAGCAGTATGTAAAAGTTGGAACTGTTCTTCGTCAATTTGGGTATACAGTGGTAGCTCTACATGGGTGTTTGAGAACAGAAATTAAGACACCACGATCTGTTAGAGTCATGTTCAAGGACCCTTGCATAAGGCTTGCAGCAGAGGTATCAAAAGTGCTGATAGAACTTGCCAATAGCATAAGGAACCGTCGCCATTGTTCACCAGAAATACTCTCTGATCATCTTCATGAAGCATTGCAGGACCTTAACACTGCTATAAAATCTCAGCCTAGGCTTTTTCTAGGCTCCAATGACAGCCAAGCTAACAACATGCTTGCCATAGCTGCAGCACATGCAGGACAGACAAAACATGGAAAGGGTTCACTTTCAAGTGTTAAAACTGACTCTTCAGCTTTGTTAGATTGGAAAACCAAAAGGGGTTCTGCTGAACAGTCAAAGGAAGCAGAACGAAAGATGTTAAGACCCCAGCTTAGTAAAATTGCAATCACTAGCCTTGAGTTCTCTGAAGCTTTGCCTTTTGCTGCTTTTGCTTCTCTGCTTGTGGAAACTGTGGCTAAACTGGACTTTGTTATAGAGGAAGTTGAAGAACTTGGGAGGTTAGCATGCTTCAAAGAGTATAGACCTGGGGATGAGATTTCTGTTACTTGTGAGAGACCACGAATTGATGTGTTAGAGAATCATTTACGTCATCTGTGGATGGCATCTTGTATCACAAACTCTCTAACATTCCAAATATGGAAGACAAACCCACATTGCTTATTCGGTTGGAACATAGGCAGGAAGAAGGTTGATGAAAAACCTCAGATCAAATACCATGACATTGATCTCACTTTCTCAATTTCTCTGGTTGACAAAACATTTTTGAAAGGGAAGGAACTCAAATGCTGCTATAAGGCTACAATTGATGGATTTAGTGCAACTGATTTCCACCAATGCTGTGACTTCAAGGGGCCATGTGTGATAATTGGTTACACAAACAAGTCTTTCAAGTTTGGTGCATTTAACCCTGAAGGATATAGAAGCACAGATGACTACTGTGATACATTTGATCCCTTCCTATTTTATTGGATAGACAATGAAACTAAACCCATCATTTTGCCAAAGATTGGTGGCAGTGGTGCAGCCCTATTTGATTATGCTCGTGGGGGGCCACAATTTGGGGCAGATGGCCTTCTCATAGGCCCTCCATTAGCCCCAGTTATGGGTGGTTTTGCAGGGCCTGATACCAATTCTGGAATTGGTGACTTAAGGCAAGCTAAGTCTAGATTGGGATTGTCTTATGCCAAGAGAGAGGATGGCAAGGAGTCTATTTTTGGAGATGAGTCCAGGGCAACTCTTCAAGAAGTAGAAGTTTTCTGCAGTCCCAAAATTGCAAGCTTATACTAG 2289 0.4159 MVPKVHAGLEMAMAGNESDRIIGNWKKRMHVFGEKFRRFPIMAWKTTWKVGHDDPRRVIHAFKVGLSLTLVSLLYLLEPLFKGIGQNAIWAVMTVVVVFEFTAGATLCKGLNRGLGTLIAGLLAFFIKYVANTSGQVVQAVFIGAAVFIIGTAATYMRFFPYIKKNYDYGVVIFLLTFNLLTVSSYRVDNVLKIAHDRFYTIAIGCAVCLLMSLLIFPNWSGEDLHNSTAFKLEGLAKSIEACVNEYFYGEVENSDDIKSSEDPIYKGYKAVLDSKSTDETLALHASWEPRHSRYCHRFPWQQYVKVGTVLRQFGYTVVALHGCLRTEIKTPRSVRVMFKDPCIRLAAEVSKVLIELANSIRNRRHCSPEILSDHLHEALQDLNTAIKSQPRLFLGSNDSQANNMLAIAAAHAGQTKHGKGSLSSVKTDSSALLDWKTKRGSAEQSKEAERKMLRPQLSKIAITSLEFSEALPFAAFASLLVETVAKLDFVIEEVEELGRLACFKEYRPGDEISVTCERPRIDVLENHLRHLWMASCITNSLTFQIWKTNPHCLFGWNIGRKKVDEKPQIKYHDIDLTFSISLVDKTFLKGKELKCCYKATIDGFSATDFHQCCDFKGPCVIIGYTNKSFKFGAFNPEGYRSTDDYCDTFDPFLFYWIDNETKPIILPKIGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLSYAKREDGKESIFGDESRATLQEVEVFCSPKIASLY. 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02165 762 ProSiteProfiles TLDc domain profile. 571 756 IPR006571 -
Seca12g02165 762 Pfam TLD 597 689 IPR006571 -
Seca12g02165 762 Pfam Aluminium activated malate transporter 48 499 IPR020966 GO:0015743
Seca12g02165 762 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 35 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02165 Seca-Chr12 27913358 27925361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02165 34 520 Miscellaneous Gene Families AT4G17970 66.730 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02165 K25841 - gmx:100819748 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02165 12 27913358 27925361 Seca12g02165 12 27913358 27925361 ECH