Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02140 ATGGCCGAATCGGTGGAGCTACCGAGTCGCTTGGCGATCCTTCCCTTCAGGAACAAGGTCCTCTTACCTGGCGCCATCATCAGAATCCGTTGCACTTCCCCTAGCAGTGTGAAGTTGGTGGAACAAGAACTTTGGCAGCGAGAAGAGAAGGGGTTGATTGGCATCCTGCCAGTGCGTGATGCTGCTGAAATTAAGCCAGTGGGTCCCGCGGTAACTCAAGGAGCGGGAACTGATTTTCTAGACCAAAGCTCAAAAGTTCAAGACGGTTCATCAGATTCTCATAAGCCTGATACCAAAAAGCAGAATGATATTGTTCATTGGCATAACAGGGGGGTAGCTGCTCGACCATTACATTTATCAAGGGGAGTGGAGAAACCAAGTGGGAGGGTCACATACATAGTTGTTCTTGAAGGTTTGTGCAGATTTAGCGTCCAGGAACTGAGCACAAGAGGAATATATCATACTGCAAGGATATCTTCCCTTGAGATGACTAAGTCTGAGATGGAACAAGTAGAGCAAGACCCAGATTTCATAACATTGTCTCGCCAATTCAAAGCAACTGCCATGGAGCTCATTTCTGTTCTGGAGCTGAAACAAAAAACGGGTGGAAGGACAAAAGTCCTTTTGGACAATGTTCCAGTTCACAAGTTGGCTGATATATTTGTTGCTAGTTTTGAGATAAGTTTTGAAGAACAACTATCTATGTTGGATTCAGTTGACCCCAAAGTTAGGCTTTCAAAAGCAACTGAGTTAGTTGATAGGCATTTACAGTCAATACGTGTAGCTGAGAAAATTACACAAAAGGTTGAAGGACAATTGTCGAAATCTCAGAAAGAATTTCTTTTGCGCCAGCAGATGAGGGCTATAAAAGAGGAACTTGGTGACAATGATGATGATGAGGATGACCTGGCTGCCCTGGAAAGAAAGATGCAAACCGCAGGAATGCCACAAAATGTATGGAAACATGCACACAGAGAACTGAGGAGGCTAAAAAAAATGCAGCCTCAGCAACCTGGGTATAACAGTTCACGGGTTTACCTAGAGCTTCTAGCTGAACTGCCCTGGCAGAAGGCCAGTGAAGAGATTGAACTGGACTTGAAAGCTGCACGGAAGCGACTGGATAATGATCACTATGGTTTAGTGAAGGTCAAGCAACGGATAATTGAATACCTGGCAGTTCGCAAGCTTAAACCAGATGCAAGGGGTCCTGTGTTATGCTTTGTTGGACCACCAGGTGTTGGGAAAACATCATTGGCATCTTCCATTGCTGCTGCTTTAGGCAGAAAATTTGTGCGCATATCCCTTGGTGGAGTCAAGGATGAGGCTGATATTAGAGGACATAGGAGAACATATGTTGGAAGCATGCCGGGGCGGCTTATAGAAGGACTAAAGAGAGTAGCTGTTTGCAATCCTGTTATGTTGCTGGATGAAGTTGACAAGACAGGCTCTGATGTTCGTGGAGATCCAGCTTCAGCATTGCTAGAAGTTCTTGATCCAGAACAAAATAAAACATTCAATGATCAGTATCCTTCACTCTTCAAGATGTCTTCCCACAATTTGGTTCCCCCTCCCCGGTCTGTTGGCTATTTGAATGTTCCATTTGATCTATCCAAGGTAGTTTTTGTGGCCACAGCAAATAGGATGCAGCCTATTCCTCCACCACTTCTTGATAGGATGGAAGTGATCGAGCTTCCTGGATATACACCTGAGGAAAAGCTCCAGATAGCCATGCGGCATTTGATTCCAAGAGTTTTAGACCAGCATGGGTTGAGTTCTGAGTTTCTTCAAATTCCAGAGGCGATGGTGAAACTTGTCATTCAGCGATATACCAGGGAAGCTGGTGTGCGAAATTTGGAGAGGAACCTAGCTGCCCTGGCTCGTGCTGCTGCAGTAAGAGTTGCTGAGCAAGAACAAGTAGTTCCATTAAACAAAGGGATCCAAGGACTTGCTACACCAATTTTGGAAAACAGACTTGCTGATGGAACTGAAGTTGAAATGGAAGTGATACCAATGGGTGTCAATAGTCGGGACATCTCAAACACATTCAGGATTGCCTCTCCATTGGTTGTTGATGAAACTATGCTTGAAAAAGTGCTTGGGCCTCCAAGATTTGATGATAGAGAAGCTGCTGAACGTGTAGCTACCCCTGGGATCTCTGTTGGGCTTGTTTGGACTGCATTTGGTGGAGAAGTTCAGTTTGTGGAGGCTACAGCAATGGTGGGGAAGGGAGAACTGCATCTCACTGGACAACTTGGTGATGTAATCAAAGAATCAGCTCAAATTGCACTAACATGGGTAAGGGCAAGGGCAACTGATCTTAGGCTGGCTGCTGCAGAGGGATTTAATCTTTTGGAGGGCCGTGATGTACATATACATTTTCCTGCAGGCGCTGTACCTAAAGATGGGCCCTCAGCAGGTGTGACTTTGGTCACAGCATTGGTATCACTTTTCAGTCAGAAAAGAGTGAGGTCAGATACAGCTATGACTGGAGAGATGACGTTGAGGGGTCTTGTTCTACCTGTTGGTGGTGTCAAGGATAAGATATTAGCTGCACATCGTTATGGTATTAAGAGAGTCATCTTGCCTGAACGGAACTTGAAGGACTTGGTTGAAGTACCATCATCAGTGCTGGCCAATTTGGAGATACTGCTTGCAAAACGAATGGAAGATGTGTTAGAGCATGCTTTTGACGGTGGGTGTCCTTGGAGACAACACTCAAAGTTATAG 2727 0.4525 MAESVELPSRLAILPFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQREEKGLIGILPVRDAAEIKPVGPAVTQGAGTDFLDQSSKVQDGSSDSHKPDTKKQNDIVHWHNRGVAARPLHLSRGVEKPSGRVTYIVVLEGLCRFSVQELSTRGIYHTARISSLEMTKSEMEQVEQDPDFITLSRQFKATAMELISVLELKQKTGGRTKVLLDNVPVHKLADIFVASFEISFEEQLSMLDSVDPKVRLSKATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDEDDLAALERKMQTAGMPQNVWKHAHRELRRLKKMQPQQPGYNSSRVYLELLAELPWQKASEEIELDLKAARKRLDNDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGVKDEADIRGHRRTYVGSMPGRLIEGLKRVAVCNPVMLLDEVDKTGSDVRGDPASALLEVLDPEQNKTFNDQYPSLFKMSSHNLVPPPRSVGYLNVPFDLSKVVFVATANRMQPIPPPLLDRMEVIELPGYTPEEKLQIAMRHLIPRVLDQHGLSSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVRVAEQEQVVPLNKGIQGLATPILENRLADGTEVEMEVIPMGVNSRDISNTFRIASPLVVDETMLEKVLGPPRFDDREAAERVATPGISVGLVWTAFGGEVQFVEATAMVGKGELHLTGQLGDVIKESAQIALTWVRARATDLRLAAAEGFNLLEGRDVHIHFPAGAVPKDGPSAGVTLVTALVSLFSQKRVRSDTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPSSVLANLEILLAKRMEDVLEHAFDGGCPWRQHSKL. 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02140 908 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 801 809 IPR008268 GO:0004176|GO:0004252|GO:0006508
Seca12g02140 908 FunFam Lon protease homolog 2, peroxisomal 710 901 - -
Seca12g02140 908 PIRSF Lon_proteas 526 647 IPR004815 GO:0004176|GO:0005524|GO:0006508
Seca12g02140 908 PIRSF Lon_proteas 675 899 IPR004815 GO:0004176|GO:0005524|GO:0006508
Seca12g02140 908 PIRSF Lon_proteas 1 517 IPR004815 GO:0004176|GO:0005524|GO:0006508
Seca12g02140 908 SUPERFAMILY Ribosomal protein S5 domain 2-like 716 896 IPR020568 -
Seca12g02140 908 SUPERFAMILY PUA domain-like 10 253 IPR015947 -
Seca12g02140 908 Gene3D - 715 900 IPR014721 -
Seca12g02140 908 CDD RecA-like_Lon 366 567 - -
Seca12g02140 908 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 8 904 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Seca12g02140 908 MobiDBLite consensus disorder prediction 73 105 - -
Seca12g02140 908 Gene3D - 366 564 IPR027417 -
Seca12g02140 908 SMART AAA_5 401 566 IPR003593 GO:0016887
Seca12g02140 908 SMART lon_5 10 254 IPR003111 -
Seca12g02140 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 639 IPR027417 -
Seca12g02140 908 ProSiteProfiles Lon N-terminal domain profile. 11 254 IPR003111 -
Seca12g02140 908 Gene3D - 565 704 - -
Seca12g02140 908 Gene3D - 305 353 - -
Seca12g02140 908 FunFam Lon protease homolog 366 521 - -
Seca12g02140 908 Pfam ATP-dependent protease La (LON) substrate-binding domain 11 254 IPR003111 -
Seca12g02140 908 Gene3D - 166 297 - -
Seca12g02140 908 FunFam Lon protease homolog 304 353 - -
Seca12g02140 908 Pfam ATPase family associated with various cellular activities (AAA) 405 562 IPR003959 GO:0005524|GO:0016887
Seca12g02140 908 Pfam Lon protease (S16) C-terminal proteolytic domain 690 896 IPR008269 GO:0004176|GO:0004252|GO:0006508
Seca12g02140 908 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 908 IPR027501 GO:0004252|GO:0006515
Seca12g02140 908 Gene3D - 1 162 IPR046336 -
Seca12g02140 908 FunFam Lon protease homolog 2, peroxisomal 172 297 - -
Seca12g02140 908 MobiDBLite consensus disorder prediction 88 105 - -
Seca12g02140 908 ProSiteProfiles Lon proteolytic domain profile. 713 898 IPR008269 GO:0004176|GO:0004252|GO:0006508
Seca12g02140 908 Coils Coil 289 309 - -
Seca12g02140 908 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 851 869 - -
Seca12g02140 908 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 828 847 - -
Seca12g02140 908 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 409 428 - -
Seca12g02140 908 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 716 732 - -
Seca12g02140 908 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 798 817 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02140 Seca-Chr12 27194771 27204948 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02140 K01338 - gmx:100796563 1584.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02140 12 27194771 27204948 Seca12g02140 12 27194771 27204948 ECH