Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02134 ATGAGTACTCTTTGCAACCTCAATCAGGAGGACTTATCCTTGATCAAACCCATATGCTATACAACAACAATGGAAGTAAATACTACTACTAATTCTCGCAAGAGAGGAAGAGAAGCCACAGGAACAGGAACAGGGGTTGGTCAAACAACTTCCCCTAATGTTATCAATCAATTTTCTTTACCACCTCAGCCTCCACAGCTTATACATCTCTCTCAGCTTCATAATCATCAACAAAATGCAGTCTCCACTGGGTTACGCTTATCCTTTGATGACCAAAACAATCAACAACAACAAAGATTACAGCTTCATCAACACCAATCTCAACAACACCATAGTTATCACTCTTCTAATTTCTTATCTCTATTATCTGAAGGATTAGCTTCTCAAATCAAACAACAAAGAGATGAAATAGACCAATTCCTTCAAGTCCAGGGAGAGGAACTGCGGCGGGCATTGATGGAGAAGAGGCAGAGGCATTACCGGCCACTGTTAACCGCGGCGGAGGAAACGGTGGCGCAGCGGTTGAGAGAAAAGGAAGCCGAGGTGGAAAAGGCCACGCGCAAGAACGCCGAGTTAGAAGCGCGTGCCGCGCAGCTTAGCGTGGAGGCCCAGGTGTGGCAGGCTAAGGCCCAGGCCCAGGAGGCCGCGGCGGCTTCTCTCCAGGCCCAACTGCAACAGACCATAATGTGTCATGGTGGCGAGGATGGTGGCGGTGGAGTTTCGTGCGCGGTGGAGGGCCAGGCTGAGGATGCGGAATCAGCTTATGTTGACCCGGAGCGGGTTGTTACGGCGGCGACACGGCCCAAATGCAGAGGGTGTGGGAGGCGCGTGGCTTCAATCGTGGTTTTGCCTTGTAGGCATCTGTGTGTATGTTCAGAGTGTGATGTGCATTTCCCAGCATGCCCTGTTTGTCTCACCATCAAGAATTCAACCGTTGAGGTGTTTCTCTCCTAA 954 0.499 MSTLCNLNQEDLSLIKPICYTTTMEVNTTTNSRKRGREATGTGTGVGQTTSPNVINQFSLPPQPPQLIHLSQLHNHQQNAVSTGLRLSFDDQNNQQQQRLQLHQHQSQQHHSYHSSNFLSLLSEGLASQIKQQRDEIDQFLQVQGEELRRALMEKRQRHYRPLLTAAEETVAQRLREKEAEVEKATRKNAELEARAAQLSVEAQVWQAKAQAQEAAAASLQAQLQQTIMCHGGEDGGGGVSCAVEGQAEDAESAYVDPERVVTAATRPKCRGCGRRVASIVVLPCRHLCVCSECDVHFPACPVCLTIKNSTVEVFLS. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02134 317 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 250 316 - -
Seca12g02134 317 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 27 314 IPR017066 -
Seca12g02134 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 317 IPR013083 -
Seca12g02134 317 PIRSF SBP1_RNase_bind 5 317 IPR017066 -
Seca12g02134 317 MobiDBLite consensus disorder prediction 93 116 - -
Seca12g02134 317 Pfam Zinc finger, C3HC4 type (RING finger) 268 305 - -
Seca12g02134 317 Coils Coil 168 223 - -
Seca12g02134 317 MobiDBLite consensus disorder prediction 29 51 - -
Seca12g02134 317 ProSiteProfiles Zinc finger RING-type profile. 270 304 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02134 Seca-Chr12 26971680 26973404 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02134 K19042 - gmx:100788924 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02134 12 26971680 26973404 Seca12g02134 12 26971680 26973404 ECH
Seca12g02134 12 26971680 26973404 Seca12g02134 12 26971680 26973404 PCT