Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02127 ATGTTGTCAACTTCAAATCCCCAACCTGAGTTCCTTTTTTTTATAAATAAACGCTTACCATATTCAGCAATTCTTACAAATCCTTCATACATCTTCAAAAACATGGCTTTAACACTTCGTTCTTCAATTTCTTTCATAAATCAGAAAGAAACCACAAAAGCCCTTAAAACTTCTGATGATGTCCCTACCACAGTCAGCTTTGCAAAATTTAAGTCATCATTCTTCCGTCTCCGAGTTAAGAATTCCATGCAAGAAGCACATCTCACACGTGAGAAAAGCTTCCATTCTGAAGTAAGGAGAGATGAGAAATTGGAGAAGGTGCATGCTCCATCAGTTGCTCATAACCACAATGATTCCAAGAGGGTACCTGTATTTGTGATGCTTCCACTAGACACAGTAACAATGGGAGGGAACTTGAATAAGCCAAGAGCAATGAGTGCAAGTTTGATGGCCCTGAAGAGTGCAGGAGTTGAAGGGGTAATGGTGGATGTTTGGTGGGGTTTGGTGGAAAAAGATGGGCCTTTGAAGTATAACTGGGAAGCCTATGCTGAGCTTGTACAGATGGTACAAATGCATGGTTTGAAGCTTCAGGTTGTTATGTCTTTCCATCAGTGTGGAGGAAATGTTGGAGACTCCTGCAGCATTCCTCTACCCCCCTGGGTGCTTGAAGAAATCAGCAAGAACCCTGACCTGGTTTACACAGACAGATCAGGGAGGAGGAATCCTGAGTACATCTCCTTGGGCTGTGATTCAGTGCCTGTTCTAAGAGGAAGGACTCCCCTCCAAGTGTACGCTGACTACATGAGGAGCTTTCGTGACAGATTCAGAGATTACTTGGGCAGTGTTATTGTGGAAATACAAGTGGGGATGGGTCCTTGTGGGGAGCTGAGATATCCATCTTATCCAGAAAGCAATGGAACTTGGAGGTTTCCAGGAATTGGAGAATTCCAATGTTATGACAAGTATATGAGAGCATCCTTGGCGGCAGCAGCCGAAGCAATTGGAAAGAAGGAATGGGGAAGTAGTGGGCCCCATGACTCTGGCCAATACAATCAATTTCCTGAGGATACTGGATTTTTCAGAAGGGATGGAACATGGAACTCTGAATATGGACAATTCTTTCTGGAATGGTACTCCAGTAAATTGCTGGAACACGGTGAGAAAATCCTTGCATCAGCCAAAGGAATATTCCAAACATCTGGGGTAAAACTATCTGGTAAAATTGCTGGAATCCATTGGCATTACAAAACAAGGTCACATGCAGCTGAACTAACTGCTGGCTACTATAATACAAGACATAATGATGGATATCTACCAGTAGCTAGAATGCTGGCAAAACATGGAGTTGTCTTCAATTTCACCTGCATGGAAATGAAAGACAGAGAGCAGCCTGATCATGCTAACTGCTCACCAGAAGGGTTAGTTCACCAGGTAAAGATGGCAACATCAACAGCTAGAGCAGAACTTGCTGGGGAAAATGCATTGGAGAGATATGATGCAGGTGCATATGCTCAAGTTTTGTCAACAAGCAGTTCAGACTCCGGCAACGGATTGACTGCATTTACATATCTAAGAATGAACAAGAGGTTGTTTGAAGGTGATAATTGGCGGCACCTAGTTGAATTTGTAAGAAGCATGTCTGAAGGTGGTCGGAGACAGAGACTTTCGGACTCTGATTCACATGGCAGTGATCTTTATGTGGGGCACATCAAAAGAACTCAGGAGCACAAACAAGAGGCTGCTCTTGTGTGA 1752 0.4344 MLSTSNPQPEFLFFINKRLPYSAILTNPSYIFKNMALTLRSSISFINQKETTKALKTSDDVPTTVSFAKFKSSFFRLRVKNSMQEAHLTREKSFHSEVRRDEKLEKVHAPSVAHNHNDSKRVPVFVMLPLDTVTMGGNLNKPRAMSASLMALKSAGVEGVMVDVWWGLVEKDGPLKYNWEAYAELVQMVQMHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEISKNPDLVYTDRSGRRNPEYISLGCDSVPVLRGRTPLQVYADYMRSFRDRFRDYLGSVIVEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLAAAAEAIGKKEWGSSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGQFFLEWYSSKLLEHGEKILASAKGIFQTSGVKLSGKIAGIHWHYKTRSHAAELTAGYYNTRHNDGYLPVARMLAKHGVVFNFTCMEMKDREQPDHANCSPEGLVHQVKMATSTARAELAGENALERYDAGAYAQVLSTSSSDSGNGLTAFTYLRMNKRLFEGDNWRHLVEFVRSMSEGGRRQRLSDSDSHGSDLYVGHIKRTQEHKQEAALV. 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02127 583 SUPERFAMILY (Trans)glycosidases 120 549 IPR017853 -
Seca12g02127 583 ProSitePatterns Beta-amylase active site 1. 203 211 IPR018238 GO:0000272|GO:0016161
Seca12g02127 583 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 81 555 IPR001554 GO:0000272|GO:0016161
Seca12g02127 583 Gene3D Glycosidases 111 581 - -
Seca12g02127 583 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 437 460 IPR001554 GO:0000272|GO:0016161
Seca12g02127 583 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 474 496 IPR001554 GO:0000272|GO:0016161
Seca12g02127 583 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 156 170 IPR001554 GO:0000272|GO:0016161
Seca12g02127 583 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 419 430 IPR001554 GO:0000272|GO:0016161
Seca12g02127 583 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 177 195 IPR001554 GO:0000272|GO:0016161
Seca12g02127 583 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 402 418 IPR001554 GO:0000272|GO:0016161
Seca12g02127 583 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 199 220 IPR001554 GO:0000272|GO:0016161
Seca12g02127 583 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 291 313 IPR001554 GO:0000272|GO:0016161
Seca12g02127 583 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 366 385 IPR001554 GO:0000272|GO:0016161
Seca12g02127 583 Pfam Glycosyl hydrolase family 14 125 542 IPR001554 GO:0000272|GO:0016161
Seca12g02127 583 PRINTS Plant beta-amylase signature 281 290 IPR001371 GO:0000272|GO:0016161
Seca12g02127 583 PRINTS Plant beta-amylase signature 440 450 IPR001371 GO:0000272|GO:0016161
Seca12g02127 583 PRINTS Plant beta-amylase signature 522 536 IPR001371 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02127 Seca-Chr12 26835011 26838859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02127 35 583 Glycoside Hydrolase AT4G17090 73.455 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02127 K01177 - gmx:100818063 991.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02127 12 26835011 26838859 Seca12g02127 12 26835011 26838859 ECH