Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02123 ATGGATCAGTTGTCGGCGATCAGCGAGGACCTGGCGGAGATCGATGGACGCATCGCCGACAATTTCCGCGCCTTATCGAATGGATTTCAGAAGTTGGAGAAGATTAAAGATTCGAATAGGCAGAGCAGGCAGTTGGAAGAGCTCACAGAGAAAATGCGAGAATGTAAACGGCTTATTAAAGAGTTCGATAAAGAAGTCAAAACTTTGGAGGGTAACTTTGATAGAGAAACCAACAAAATGCTTAATGAGAAAAAGCAGTCAATGATCAAAGAGTTAAATTCATATGTTGCTTTGAAAAAACAATATGCTACAAATATTGAGAATAAGCGAATTGAGCTCTTTGAGGGGCCCAATGAAGGTTATGCAGAAGAAAATGTCTTGCTAGCTTCCTCAATGACGAATCAACAGCTAATTGGTCATGGGAATCAAATGATGGATGAGACAGATCAAGCCATTGAGAGGGGAAAGAAGGTTGTTCAAGAGACGATAAATGTTGGTACAGAGACTGCAGCAGCTCTTAAGGCTCAGACTGAACAAATGAGCAGAATTGTCAATGAGCTGGATTCTATCCATTTCTCTATAAAGAAAGCCTCTCAAATGGTCAAGGAAATCGGTAGGCAGGTCAATTTCTACAGAATCTACATCATTTTATGGCAATATAGTGACTATATGAATCAGTCATTGATTAACTTGCTGGCGTTTTTGCAATAG 711 0.4008 MDQLSAISEDLAEIDGRIADNFRALSNGFQKLEKIKDSNRQSRQLEELTEKMRECKRLIKEFDKEVKTLEGNFDRETNKMLNEKKQSMIKELNSYVALKKQYATNIENKRIELFEGPNEGYAEENVLLASSMTNQQLIGHGNQMMDETDQAIERGKKVVQETINVGTETAAALKAQTEQMSRIVNELDSIHFSIKKASQMVKEIGRQVNFYRIYIILWQYSDYMNQSLINLLAFLQ. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02123 236 SMART tSNARE_6 137 204 IPR000727 -
Seca12g02123 236 Gene3D - 133 209 - -
Seca12g02123 236 FunFam novel plant SNARE 11 133 212 - -
Seca12g02123 236 SUPERFAMILY SNARE fusion complex 132 205 - -
Seca12g02123 236 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 24 215 - -
Seca12g02123 236 Coils Coil 38 79 - -
Seca12g02123 236 CDD SNARE_SNAP25N_23N_29N_SEC9N 140 203 IPR044766 GO:0005484|GO:0031201
Seca12g02123 236 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 142 204 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02123 Seca-Chr12 26740297 26745086 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02123 K08494 - gmx:100786429 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02123 12 26740297 26745086 Seca12g02123 12 26740297 26745086 ECH