Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02120 ATGTACAAAGAGCGAGGTCTTCCTTCCTCCAAATCGGAGGATCGGAAGCGCATCAACGACGTCCTCGACAAGCAGCTCGAGCGATCCTCTCCCTCCACTTCTAAACCCATCAACGGCAAAGACAGAGACCGAGATAGAGACAAAGACCCTCGCTCCGCCTCCGCCTCCAAAAATTCCAACCTCTCTGAGGAATCTGAAACAGACAGTGAAGAGTCTGATGTTAGTGGTTCTGATGGTGATGATACATCTTGGATCTCATGGTTCTGCAATCTGAGAGGAAATGAATTCTTCTGCGAGGTTGATGATGATTACATCCAAGATGACTTCAACCTCTGTGGATTAAGCAGTCAAGTGCCATATTATGATTATGCACTTGATTTAATTTTGGATGTTGAATCCTCCCATGGTGACATGTTCACAGAGGAACAGAATGAGTTAGTTGAGTCAGCAGCAGAGATGCTTTATGGTCTGATTCATGCCCGATATGTATTGACAAGCAAAGGAATGGCTGCCATGCTTGACAAGTACAAGAACTATGATTTTGGCAGATGCCCAAGAGTTTACTGCTCTGGACAACCCTGCCTTCCAGTTGGCCAGTCAGACATTCCTAGGTCAAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGATCTTTACTACCCTCGGTCCAAGTATCAAGGCAGTATCCTTATATCTATTATTGAACATTGTTGTGGGAGATTTAAAGCTGATGCAGCTATGTATTGCTATGTTGCTGAGAAACTATTTCTCTTCTCTTGTGGTTCTCATTTCCTTCTTGCTTTTGAATTTCATTCTTTAGCTTGTCATATGAGTTACATTGATGGAGCGTATTTTGGAACAACATTTCCCCACCTCTTCCTGATGACTTATGGACAACTGAAGCCACAGAAACCATCACAGGGCTATGTTCCGAGAGTTTTTGGGTTCAAACTTCACAAGCCATGA 966 0.4358 MYKERGLPSSKSEDRKRINDVLDKQLERSSPSTSKPINGKDRDRDRDKDPRSASASKNSNLSEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHARYVLTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQGSILISIIEHCCGRFKADAAMYCYVAEKLFLFSCGSHFLLAFEFHSLACHMSYIDGAYFGTTFPHLFLMTYGQLKPQKPSQGYVPRVFGFKLHKP. 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02120 321 FunFam Casein kinase II subunit beta 76 180 - -
Seca12g02120 321 MobiDBLite consensus disorder prediction 1 79 - -
Seca12g02120 321 MobiDBLite consensus disorder prediction 37 53 - -
Seca12g02120 321 FunFam Casein kinase II subunit beta 181 232 - -
Seca12g02120 321 Gene3D - 181 306 - -
Seca12g02120 321 MobiDBLite consensus disorder prediction 1 24 - -
Seca12g02120 321 ProSitePatterns Casein kinase II regulatory subunit signature. 184 215 IPR000704 GO:0005956|GO:0019887
Seca12g02120 321 SMART CK_II_beta_2 83 317 IPR000704 GO:0005956|GO:0019887
Seca12g02120 321 Pfam Casein kinase II regulatory subunit 83 227 IPR000704 GO:0005956|GO:0019887
Seca12g02120 321 Pfam Casein kinase II regulatory subunit 277 317 IPR000704 GO:0005956|GO:0019887
Seca12g02120 321 PRINTS Casein kinase II regulatory subunit family signature 100 114 IPR000704 GO:0005956|GO:0019887
Seca12g02120 321 PRINTS Casein kinase II regulatory subunit family signature 202 223 IPR000704 GO:0005956|GO:0019887
Seca12g02120 321 PRINTS Casein kinase II regulatory subunit family signature 83 99 IPR000704 GO:0005956|GO:0019887
Seca12g02120 321 PRINTS Casein kinase II regulatory subunit family signature 155 176 IPR000704 GO:0005956|GO:0019887
Seca12g02120 321 PRINTS Casein kinase II regulatory subunit family signature 180 201 IPR000704 GO:0005956|GO:0019887
Seca12g02120 321 PANTHER CASEIN KINASE II SUBUNIT BETA 62 320 IPR000704 GO:0005956|GO:0019887
Seca12g02120 321 SUPERFAMILY Casein kinase II beta subunit 266 320 IPR035991 GO:0005956|GO:0019887
Seca12g02120 321 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 76 180 IPR016149 GO:0005956|GO:0019887
Seca12g02120 321 SUPERFAMILY Casein kinase II beta subunit 81 226 IPR035991 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02120 Seca-Chr12 26644128 26647491 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02120 K03115 - gmx:100799304 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02120 12 26644128 26647491 Seca12g02120 12 26644128 26647491 ECH
Seca12g02120 12 26644128 26647491 Seca12g02120 12 26644128 26647491 PCT