Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02116 ATGTTGATTTTTGGTTTCCCAGTCACTGTCAGTGAGGTTGAAGCATTATTTGAGCTTTTTAAGAGCATCAGCAGTTCTGTTGTTGATGATGGACTAATAAGCAAGGAAGAATTTCAATTGGCAATCTTCAAGAATAGGAAAAAAGAAAATATCTTTGCAAATCGGATCTTTGATCTATTTGATGTCAAGAGGAAGGGAGTTATTGATTTTGATGACTTTGTTAGATCTCTCAATGTCTTCCACCCAAATGCACCACTAGAAGACAAGATAGATTTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCAAGAGGTCAAGCAAATGTTAATTGCCCTTCTTTGTGAGTCTGAAATGAAGTTGGCTGATGAGGTGATAGAAACAATTCTAGATAAGACTTTCTTGGATGCTGACCAAAATCGAGATGGTAAAATAGACATTGTTGAGTGGCGAAATTTTGTTTCTGAAAATCCATCACTACTGAAAATAATGACCTTACCTTACCTAAGGGACATAACAACTTCTTTCCCAAGTTTTGTATTTAATTCTAACGTGGATGAAATTGTCGCTTGA 585 0.359 MLIFGFPVTVSEVEALFELFKSISSSVVDDGLISKEEFQLAIFKNRKKENIFANRIFDLFDVKRKGVIDFDDFVRSLNVFHPNAPLEDKIDFSFRLYDLHNTGFIERQEVKQMLIALLCESEMKLADEVIETILDKTFLDADQNRDGKIDIVEWRNFVSENPSLLKIMTLPYLRDITTSFPSFVFNSNVDEIVA. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02116 194 FunFam calcineurin B-like protein 3 3 191 - -
Seca12g02116 194 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Seca12g02116 194 ProSiteProfiles EF-hand calcium-binding domain profile. 129 164 IPR002048 GO:0005509
Seca12g02116 194 ProSiteProfiles EF-hand calcium-binding domain profile. 85 120 IPR002048 GO:0005509
Seca12g02116 194 SUPERFAMILY EF-hand 6 183 IPR011992 -
Seca12g02116 194 CDD EFh 89 159 IPR002048 GO:0005509
Seca12g02116 194 PRINTS Recoverin family signature 149 169 - -
Seca12g02116 194 PRINTS Recoverin family signature 56 77 - -
Seca12g02116 194 PRINTS Recoverin family signature 103 121 - -
Seca12g02116 194 Gene3D - 6 192 - -
Seca12g02116 194 PANTHER CALCINEURIN B 8 191 IPR045198 GO:0005509|GO:0019722|GO:0019900
Seca12g02116 194 Pfam EF-hand domain pair 88 157 IPR002048 GO:0005509
Seca12g02116 194 SMART efh_1 52 80 IPR002048 GO:0005509
Seca12g02116 194 SMART efh_1 89 117 IPR002048 GO:0005509
Seca12g02116 194 SMART efh_1 133 161 IPR002048 GO:0005509
Seca12g02116 194 ProSitePatterns EF-hand calcium-binding domain. 142 154 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02116 Seca-Chr12 26539531 26543962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02116 9 194 EF-hand Containing Proteins AT4G17615 84.409 1.85e-112 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02116 K06268 - cit:102622664 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02116 12 26539531 26543962 Seca12g02116 12 26539531 26543962 ECH
Seca12g02116 12 26539531 26543962 Seca12g02116 12 26539531 26543962 PCT