Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01962 ATGGCTTCTCCTCTGTTATTGCTCTTCCTCATACTACTCTCTACTTCCCATCCCTCATCATCACAAATGCTACTATTACCTCTAACCCACTCTCTTTCCCAAACACAGTTCAACACAACCCACCACCTCCTCAAATCCACCTCCACTCGTTCCACAGCTCGCTTCCACCACCACATAAAACGACACCGTCAACGCCAACTCTCTCTCCCTCTCTCCCCAGGAAGTGACTACACTCTCTCCTTCAACTTAGGCTCCCACTCCAAACAACAACAACCCATAACACTCTACATGGACACTGGCAGCGACCTCGTTTGGTTCCCATGCGCACCTTTTAAATGCATACTCTGTGAAGGCAAGTCCAACCCTTCATCTTCTCATTCCCCAGCCAACACCTCCCAAAGCGACGCCGTTTCATGCAACTCCCCTGCATGCTCTGCAGCACACAACTCAATCCCTTCCTCTGATCTCTGCACAATGGCTCATTGCCCTCTCGAATCCATCGAAACCTCCGATTGCGATTCCTTCTCTTGTCCACCATTTTACTATGCTTATGGCGACGGAAGCTTAATCGCTCGTCTCCATCGCGATACGCTTTCTCTTTCTTCACTTCATCTCAAGAATTTCACATTCGGTTGCGCTCATACCACGCTCGCCGAACCCACCGGAGTTGCCGGATTCGGCCGCGGCTTGCTCTCTCTCCCTGCTCAGTTAGCTACCTTAGCTCCACAGCTTGGTAACCGTTTCTCTTACTGCTTGGTTTCTCACTCGTTCCGCTCTGAGCGAGTTCGGCGACCGAGTCCACTCATCCTCGGCCGCTATGAAGAACAGAGCATTGGTGATGGTGAAATGGCTGAGTTTGTTTACACGCCGATGCTTGAAAACCCTAAGCATCCCTATTTCTACTGCGTAGGGCTCGTCGGAATCTCCGTGGGGAAAAGAACCGTTCCCGCGCCGGAGATGCTGCGGAGGGTGAACCACAGAGGAGACGGAGGCGTGGTTGTGGATTCCGGCACGACGTTCTCGATGTTGCCGGCGGGTTTCTACAACTCGGTGGTGGCTGAGTTTGATAACCGAGTCGGGCGAGTCCACCAGCGTGCGAGTGGGATTGAGGAGAAAACGGGACTCGGTCCGTGTTATTATTTGGACGACTCGGCGCCGGGAGTGCCGGCGGTGACGCTGCGTTTTGCTGGGGGGAATGTATCCAGTGTGGTCCTGCCTAGGAAGAATTATTTCTACGAGTTTTTGGACGGTAGTGATGGAGGGAGGACGAAAAGGAGAGTGGGGTGTTTGATGCTGATGAACGGTGGAGATGAGTCTGAGTTTAGTGGTGGCCCCGGGGCAATTCTTGGGAATTACCAACAGCAGGGATTTGAAGTTGAGTATGATCTGGAAAAGAAGCGCGTGGGTTTCGCCAGGAGGCAGTGCGCGTCGCTTTGGGATAGGCTCAACAACGACAAAAACTAG 1464 0.5273 MASPLLLLFLILLSTSHPSSSQMLLLPLTHSLSQTQFNTTHHLLKSTSTRSTARFHHHIKRHRQRQLSLPLSPGSDYTLSFNLGSHSKQQQPITLYMDTGSDLVWFPCAPFKCILCEGKSNPSSSHSPANTSQSDAVSCNSPACSAAHNSIPSSDLCTMAHCPLESIETSDCDSFSCPPFYYAYGDGSLIARLHRDTLSLSSLHLKNFTFGCAHTTLAEPTGVAGFGRGLLSLPAQLATLAPQLGNRFSYCLVSHSFRSERVRRPSPLILGRYEEQSIGDGEMAEFVYTPMLENPKHPYFYCVGLVGISVGKRTVPAPEMLRRVNHRGDGGVVVDSGTTFSMLPAGFYNSVVAEFDNRVGRVHQRASGIEEKTGLGPCYYLDDSAPGVPAVTLRFAGGNVSSVVLPRKNYFYEFLDGSDGGRTKRRVGCLMLMNGGDESEFSGGPGAILGNYQQQGFEVEYDLEKKRVGFARRQCASLWDRLNNDKN. 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01962 487 Gene3D Acid Proteases 63 271 IPR021109 -
Seca12g01962 487 FunFam Probable aspartyl protease At4g16563 67 270 - -
Seca12g01962 487 Pfam Xylanase inhibitor C-terminal 301 471 IPR032799 -
Seca12g01962 487 SUPERFAMILY Acid proteases 73 480 IPR021109 -
Seca12g01962 487 ProSiteProfiles Peptidase family A1 domain profile. 77 471 IPR033121 -
Seca12g01962 487 CDD pepsin_A_like_plant 77 475 IPR034161 -
Seca12g01962 487 Pfam Xylanase inhibitor N-terminal 77 270 IPR032861 -
Seca12g01962 487 FunFam aspartic proteinase nepenthesin-1 276 480 - -
Seca12g01962 487 Gene3D Acid Proteases 273 480 IPR021109 -
Seca12g01962 487 PANTHER ASPARTYL PROTEASES 5 469 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01962 Seca-Chr12 23568578 23570041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01962 77 478 Miscellaneous Gene Families AT1G44130 23.898 6.72e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01962 - - gmx:100805699 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01962 12 23568578 23570041 Seca12g01962 12 23568578 23570041 ECH
Seca12g01962 12 23568578 23570041 Seca12g01962 12 23568578 23570041 PCT