Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01944 ATGCACAAGAGCGCTTCAGCTTCGTCGTTGGGCCCAGGAGGCTTGGACCTAACCCAAGCCTTCTTCAAGCCCATCTCCAACGCCGATTCTCGCTCTTCCACCAAGCGCCACAACAAGATCTCTGTCATCGGCGCCGGAAACGTCGGAATGGCCATTGCACAAACCATCCTCACTCAAGACCTCACCGACGAGCTCGTCATCGTCGACAACAAGCCCGACAAGCTCCGCGGAGAGATGCTCGACCTCCAGCACGCCGCCGCCTTCCTCCCCCGCGTCAAGATCAACGCCTCCGTCCACTACTCCGTCACCGCCGGCTCTGATCTCTGCATCGTCACCGCCGGAGCACGCCAGATCGCCGGCGAATCCAGGCTCAACCTGCTCCAGAGGAACCTCTCCCTGTTCCAGGCCATCATTCCCGAACTGGTTAATCACTCGCCGGACTGTGTTCTCCTCATCGTTTCAAACCCCGTCGATGTCCTCACCTACGTCGCTTGGAAACTCTCTAAGTTCCCCTCCAACCGGGTCATCGGGTCGGGTACCAACTTGGACTCATCTCGCTTCCGTTTCCTTATTGCCGATCATCTCGACGTCAACGCTCAGGACGTGCAGGCTTATATAGTGGGGGAGCATGGGGATAGTTCGGTGGCTTTATGGTCTAGCATTAGTATTGGGGGTGTTCCGGTGCTAAGCTTTTTGGAGAAGCAGCAGATCGCTTATGAGAAAGAAACGCTGGAGAACATACACAAGACAGTGATAGACAGCGCTTATGAAGTTATCAGTTTGAAAGGTTACACTTCTTGGGCGATTGGGTACTCGGTGGCTAACTTGGCACGATCCATTCTCAGGGACCAGAGGAAGATCCACCCTGTGTCTGTTCTGGCAAAGGGCTTTTATAGCATTGGTGATGCTGAAGTGTTCCTGAGCTTGCCTGCACAGCTTGGTAGAGGAGGGGTACTGGGTGTGACTAATGTGCATTTGAATGAAGAGGAGGAGCAAAGGCTCAGAGACTCGGCCAAGACCATCTGGGAGGTCCAGACTCAGTTGGGTATTTGA 1053 0.5461 MHKSASASSLGPGGLDLTQAFFKPISNADSRSSTKRHNKISVIGAGNVGMAIAQTILTQDLTDELVIVDNKPDKLRGEMLDLQHAAAFLPRVKINASVHYSVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFQAIIPELVNHSPDCVLLIVSNPVDVLTYVAWKLSKFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSISIGGVPVLSFLEKQQIAYEKETLENIHKTVIDSAYEVISLKGYTSWAIGYSVANLARSILRDQRKIHPVSVLAKGFYSIGDAEVFLSLPAQLGRGGVLGVTNVHLNEEEEQRLRDSAKTIWEVQTQLGI. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01944 350 Gene3D - 20 179 - -
Seca12g01944 350 CDD LDH_1 35 347 - -
Seca12g01944 350 SUPERFAMILY LDH C-terminal domain-like 178 347 IPR015955 GO:0003824|GO:0016616
Seca12g01944 350 NCBIfam L-lactate dehydrogenase 42 343 IPR011304 GO:0004459|GO:0005737
Seca12g01944 350 PRINTS L-lactate dehydrogenase signature 205 218 IPR001557 GO:0016616|GO:0019752
Seca12g01944 350 PRINTS L-lactate dehydrogenase signature 39 63 IPR001557 GO:0016616|GO:0019752
Seca12g01944 350 PRINTS L-lactate dehydrogenase signature 175 193 IPR001557 GO:0016616|GO:0019752
Seca12g01944 350 PRINTS L-lactate dehydrogenase signature 151 171 IPR001557 GO:0016616|GO:0019752
Seca12g01944 350 PRINTS L-lactate dehydrogenase signature 64 88 IPR001557 GO:0016616|GO:0019752
Seca12g01944 350 Gene3D - 180 348 IPR015955 GO:0003824|GO:0016616
Seca12g01944 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 24 177 IPR036291 -
Seca12g01944 350 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 180 341 IPR022383 GO:0016616
Seca12g01944 350 PIRSF Lac_mal_DH 34 350 IPR001557 GO:0016616|GO:0019752
Seca12g01944 350 Hamap L-lactate dehydrogenase [ldh]. 37 349 IPR011304 GO:0004459|GO:0005737
Seca12g01944 350 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 18 348 - -
Seca12g01944 350 Pfam lactate/malate dehydrogenase, NAD binding domain 39 177 IPR001236 GO:0016491
Seca12g01944 350 FunFam Malate dehydrogenase 33 179 - -
Seca12g01944 350 ProSitePatterns L-lactate dehydrogenase active site. 207 213 IPR018177 GO:0004459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01944 Seca-Chr12 23348066 23350821 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01944 K00016 - gmx:100814897 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01944 12 23348066 23350821 Seca12g01944 12 23348066 23350821 ECH
Seca12g01944 12 23348066 23350821 Seca12g01944 12 23348066 23350821 PCT