Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01922 ATGCGAGTGAAGGAAATGCACCCGTTGTGCTGCATCTCCCTGGAGAGTCCAGGGATCGGAAGCCACTCGCCGGAGCCAGACACGGCGGCGCTATCGAGGACGAGGAGTCTTCCGGCGGGTGGATCTGACGGCATTGGGCGTCGAGGATCGGAAGCCACGGTGGCCGGAGTTCTCTACAAGTGGACCAATTACGGCAAGGGATGGAGATCTCGGTGGTTCCTTCTCCGCAATGGCGTACTCTCTTACGCCAAGATCCGGTCGCCGGAGAATCTAAATCTTCTCACCACCGTCGACGATGTTCGCCTCATCGGAGAAGTCACCGCTAACCGCCTCGCCAGAATGGACAGGGACGGCTCCGGCAACATGCGTCGGAAAAACCACAAACCTCCTCCTTCTGCTTCTTCAGTGGTTCATCTCAAGATCTCGTCATTTAGAGAGAGCAAGTCAGACGATAGGCGATTCTATATATTTACAGCAACAAAGACTCTCCATCTGAGAACTGATTCAAGGAAAGACCGTGTAGCGTGGATACAAGCTTTGGTGTCAACCCGTGGCTTGTATCCACTTAGACCACTCACTGATCATCTCTCCCTCGCACCAAATCATGTGTCTGTGTCAACCGAGAGGCTTAAGAAACGCTTGATTGAAGAGGGTAGCAGTGAGAACCTTGTCAAGGAGTGCGAGCAAATCATGCTTGCTGAATTCTCCGAATTACAAGAGCAACTTAAAATTCTCTGTCAGGAACGGTCAAATTTGTTTGATACAATAAGGCAGTTGGAGGCAGCTAACCTTGAGCCTGACGCCTCTGCCTTGCATGACGGTGAATTCCAATTAACAAAGAATGAATTTTCAAGTCTAGGACGTGGAAAATATAGTGAATGCAGTACAACTGAATCATCCGATGATATTGAGAAACAGGAGGTGGAGGAAGTGTCAGAAGAAGATGAAATCTCTTATTATGATACTAGAGAGTATTTTGCTGAACCCGGTTTCAGGTGTGGGTCAAAAGGAGCTCCTGATCAAGTGAACACGTCTGGGGAAGCTAACACACAATGCATTGATATGGAGAACAGTCATGTTGACAAGATGATCTATGATTTTGGGCACCCTCAGATAGCGAGGCGAAAAAAGCTTCCCGATCCTGTTGAGAAAGAGAAGGGCGTTAGTCTTTGGTCAATGATAAAAGACAATGTGGGCAAAGATCTCACACGAGTTTGTCTTCCTGTATACTTTAATGAGCCAATATCATCCCTTCAAAAATGTTTTGAGGACTTGGAGTATTCATATCTTCTGGATCGAGCTTATGAGTATGGAAAAGCAGGAAACGGTCTCCTTCGGGCACTGCATGTTGCTGCCTTTGCAGTTTCTGGATATGCATCATCTGAAGGCCGTCATTGTAAACCCTTTAATCCTTTGCTAGGGGAAACTTATGAAGCTGATTTTCCTGACAAAGGACTTCGCTTCTTTTCTGAGAAGGTAAGTCACCATCCAACTGTCGTTGCCTGTCACTGTGAAGGTAGAGGATGGAGGTTTTGGGCTGACAGTAACATTCGTTCAAAGTTTTGGGGAAGGTCAATTCAGCTTGACCCAGTGGGAGTTCTGACACTAGAGTTTGATGATGGCGAAATATTTCAGTGGAGCAAGGTTACGACTTCAATTTATAATCTTATCCTTGGTAAAATATATTGTGACCATCATGGGAATATGGACATCCGTGGTAATCGCCAATATTCATGCAGACTCAAATTCAAAGAGCAGACAATTCTTGACCGAAATCCTCACCAGGTGCATGGATTTGTTGAAGATGCAATGGGAAAAAAAGTTGCCACATTATTTGGCAAGTGGGATGACAGCATGCATTATATCAGTGGTGATGTGAATGTCAAGCCAAAAGATTTCACTTCATCAGATGCAACCCTGTTGTGGAAAAGGACTAGGCCACCTTCTAACCTCACTCGGTACAATATGACATCATTTGCCATCACACTGAATGAACTTACTCCAGGGCTGAAGCCTTTTCTGATCCCGGGTATTTGA 2037 0.4605 MRVKEMHPLCCISLESPGIGSHSPEPDTAALSRTRSLPAGGSDGIGRRGSEATVAGVLYKWTNYGKGWRSRWFLLRNGVLSYAKIRSPENLNLLTTVDDVRLIGEVTANRLARMDRDGSGNMRRKNHKPPPSASSVVHLKISSFRESKSDDRRFYIFTATKTLHLRTDSRKDRVAWIQALVSTRGLYPLRPLTDHLSLAPNHVSVSTERLKKRLIEEGSSENLVKECEQIMLAEFSELQEQLKILCQERSNLFDTIRQLEAANLEPDASALHDGEFQLTKNEFSSLGRGKYSECSTTESSDDIEKQEVEEVSEEDEISYYDTREYFAEPGFRCGSKGAPDQVNTSGEANTQCIDMENSHVDKMIYDFGHPQIARRKKLPDPVEKEKGVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRAYEYGKAGNGLLRALHVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPDKGLRFFSEKVSHHPTVVACHCEGRGWRFWADSNIRSKFWGRSIQLDPVGVLTLEFDDGEIFQWSKVTTSIYNLILGKIYCDHHGNMDIRGNRQYSCRLKFKEQTILDRNPHQVHGFVEDAMGKKVATLFGKWDDSMHYISGDVNVKPKDFTSSDATLLWKRTRPPSNLTRYNMTSFAITLNELTPGLKPFLIPGI. 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01922 678 MobiDBLite consensus disorder prediction 116 135 - -
Seca12g01922 678 Gene3D - 48 185 IPR011993 -
Seca12g01922 678 Pfam Pleckstrin homology domain 56 180 - -
Seca12g01922 678 Pfam Oxysterol-binding protein 389 671 IPR000648 GO:0008289
Seca12g01922 678 SUPERFAMILY Oxysterol-binding protein-like 384 655 IPR037239 -
Seca12g01922 678 SUPERFAMILY PH domain-like 51 182 - -
Seca12g01922 678 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 53 672 IPR000648 GO:0008289
Seca12g01922 678 SMART PH_update 52 187 IPR001849 -
Seca12g01922 678 MobiDBLite consensus disorder prediction 17 46 - -
Seca12g01922 678 FunFam oxysterol-binding protein-related protein 1D isoform X1 475 646 - -
Seca12g01922 678 Gene3D - 475 647 - -
Seca12g01922 678 ProSiteProfiles PH domain profile. 51 185 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01922 Seca-Chr12 22841447 22853570 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01922 K20456 - gmx:100812205 1209.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01922 12 22841447 22853570 Seca12g01922 12 22841447 22853570 ECH
Seca12g01922 12 22841447 22853570 Seca12g01922 12 22841447 22853570 PCT