Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01913 ATGTACTACAAAGGATGGTATCACTTTTTCTACCAGTACAATCCGAATGGTGCAGTTTGGGGTGATATAGTTTGGGGACATGCTGTGTCAAGGGACATGATTCATTGGCTTCACCTTCCATTAGCAATGGTGGCTGATCAATGGTATGACATGGATGGTGTGTGGACAGGTTCTGCTACCATCTTACCCAATGGTCAAGTTATCATGTTATACACTGGTTCCACCAATGAGTCAGTGCAAGTACAGAATCTTGCTTATCCTGCTGACCCTTCTGATCCTCTCCTTGTGGAATGGGTCAAATACTCAGGGAACCCAGTTCTGTTCCCTCCACCAGGCATTCATTCCAAGGACTTCCGTGACCCAACCACTGCATGGCTCACCTCTGAAGGAAAGTGGCGCATAACCATAGGGTCCAAGCTTAACAAAACTGGTATTGCATTGGTTTATGACACTGAGGACTTCAAGAGCTATGAGCTTAAGGAGGATTTGCTCCATGCTGTCCCTGGTACTGGCATGTGGGAGTGTGTGGACTTCTTCCCTGTGTCTAAGAAGGCTGAAAATGGATTGGATACATCCATTAATGGGGCTGAGGTGAAGCATGTGATGAAGGTGAGCTTGGATGATGATAGGCATGATTACTATGCACTAGGGACTTATGATGAGAAGAAGGTTAAGTTCAGACCAGATGACTTTAAGAATGATGTTGGTATTGGATTGAGGTATGACTATGGTATATTCTATGCATCCAAGACATTTTATGATCAGAAAAAGGATAGGAGAGTGTTGTGGGGTTGGATTGGAGAGTCTGATAGTGAATATGCTGATGTGGCCAAAGGTTGGGCATCAGTTCAGGGTATTCCAAGAACTGTGAAGCTTGATAAGAAGACTGGCAGCAACTTACTTCAGTGGCCTGTTGCTGAGGTGGAGAGTTTGAGATTAAGAAGTGATGAATTTAAAGATTTGAAGGCCAAGCCAGGGTCAGTGGTGTCAATAGATATTGAAACTGCCACACAGTTGGACATTGTTGCTGAGTTTGAGATAGATAAGGAAGCCTTGGAGAAAACAGCACAATCCAATGTGGAGTATCAGTGCAGCACTAGTGGTGGAGCTATCCAACGTGGTGCTTTAGGACCTTTTGGTCTTTTGGTTTTGGCAGATGATGGACTTTCTGAATATACTCCTGTGTACTTTTATGTTGTTAAAGGAAGCAATGGAAATCTTAAGACTTCCTTCTGCTCTGATCAATCAAGATCTTCTATGGCAAATGATGTTCATAAGCAAATCTTTGGGAGCACTGTTCCAGTACTTGAAGGGGAAAAGTTGTCCCTACGGATACTGGTGGACCATTCTATAGTTGAAAGCTTTGCTCAAGGTGGAAGGACATGTGTGACATCTCGGGTTTATCCAACAAGGGCAATCTATGGAGCTGCTCGATTGTTCTTGTTCAACAATGCTACTGAGGCCACTGTGACCGCCTCACTCAAAGTTTGGCAAATGAATTCTGCATTTATACGCCCATTCCACCCTGATCAGAAAAGTTGA 1542 0.439 MYYKGWYHFFYQYNPNGAVWGDIVWGHAVSRDMIHWLHLPLAMVADQWYDMDGVWTGSATILPNGQVIMLYTGSTNESVQVQNLAYPADPSDPLLVEWVKYSGNPVLFPPPGIHSKDFRDPTTAWLTSEGKWRITIGSKLNKTGIALVYDTEDFKSYELKEDLLHAVPGTGMWECVDFFPVSKKAENGLDTSINGAEVKHVMKVSLDDDRHDYYALGTYDEKKVKFRPDDFKNDVGIGLRYDYGIFYASKTFYDQKKDRRVLWGWIGESDSEYADVAKGWASVQGIPRTVKLDKKTGSNLLQWPVAEVESLRLRSDEFKDLKAKPGSVVSIDIETATQLDIVAEFEIDKEALEKTAQSNVEYQCSTSGGAIQRGALGPFGLLVLADDGLSEYTPVYFYVVKGSNGNLKTSFCSDQSRSSMANDVHKQIFGSTVPVLEGEKLSLRILVDHSIVESFAQGGRTCVTSRVYPTRAIYGAARLFLFNNATEATVTASLKVWQMNSAFIRPFHPDQKS. 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01913 513 Gene3D - 316 499 - -
Seca12g01913 513 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 1 502 - -
Seca12g01913 513 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 1 316 - -
Seca12g01913 513 Pfam Glycosyl hydrolases family 32 C terminal 307 498 IPR013189 -
Seca12g01913 513 SUPERFAMILY Concanavalin A-like lectins/glucanases 304 503 IPR013320 -
Seca12g01913 513 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 316 499 - -
Seca12g01913 513 SUPERFAMILY Arabinanase/levansucrase/invertase 1 305 IPR023296 -
Seca12g01913 513 CDD GH32_Fruct1-like 1 292 - -
Seca12g01913 513 Pfam Glycosyl hydrolases family 32 N-terminal domain 1 304 IPR013148 -
Seca12g01913 513 Gene3D Glycosyl hydrolase domain; family 43 1 315 IPR023296 -
Seca12g01913 513 SMART glyco_32 1 459 IPR001362 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01913 Seca-Chr12 22474757 22477914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01913 1 507 Glycoside Hydrolase AT1G12240 70.874 0.0 765
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01913 K01193 - gmx:100788844 966.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01913 12 22474757 22477914 Seca12g01913 12 22474757 22477914 ECH
Seca12g01913 12 22474757 22477914 Seca12g01913 12 22474757 22477914 PCT