Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01750 ATGAACTCTCGTGAAGCTACTCTAGTGGCCACAGCAACCGTCTTTGGTGCTTTGGCCTCTGCAATTGCTCTCCGCTTCTTCTACCGCTCCCAGAAGCATTTATCCAAAACCAATCACTCGCAAAACGGCATCGTTTCCCCTTCTCCTGACCCTTTCGATCCCTCCAAGCGCAAAGGATACTTGTCATGGGATGACTATTTCATGGCAATTGCATTTTTGTCAGCTGAAAGATCCAAAGACCCTAACAGGCAGGTTGGGGCTTGCTTGGTGAGTCAAGATGGTATAATTCTTGGCATTGGTTATAATGGATTTCCAAGGGGTTGTTCTGATGACAAGCTACCTTGGGCAAAGGTTGTTACTGTATTCTTCATTGAACTGAGTGAGGTCTTGTTGACCATGCTATATTTTGTCTATTTTAGTTATGTGTGTCATGCGGAAGTAAATGCCATTCTTAACACCAATCATGCCTCTGCTGCTGGACAACGGCTATATGTGACCATGTTTCCTTGCAATGAATGTGCTAAGATCATAATCCAGTCAGGAGTGTCTGAAGTCATTTATTTTGTGGAGAAGAGATTAGAAAATTCAGATATTGCATACATAGCCTCTCACAAACTACTCTCATTGGCTGGCATAAAGGTCAGGAAACATCAACCACTGATGCATGAAATTCATCTGAAGTTTGAGCAGCGCTAG 696 0.4339 MNSREATLVATATVFGALASAIALRFFYRSQKHLSKTNHSQNGIVSPSPDPFDPSKRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKVVTVFFIELSEVLLTMLYFVYFSYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLENSDIAYIASHKLLSLAGIKVRKHQPLMHEIHLKFEQR. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01750 231 CDD deoxycytidylate_deaminase 64 187 IPR035105 -
Seca12g01750 231 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 144 177 IPR016192 GO:0008270|GO:0016787
Seca12g01750 231 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 62 214 IPR002125 -
Seca12g01750 231 SUPERFAMILY Cytidine deaminase-like 64 218 IPR016193 GO:0003824
Seca12g01750 231 Gene3D Cytidine Deaminase, domain 2 54 231 - -
Seca12g01750 231 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 62 188 IPR002125 -
Seca12g01750 231 PANTHER DEOXYCYTIDYLATE DEAMINASE-RELATED 46 230 IPR015517 -
Seca12g01750 231 FunFam Deoxycytidylate deaminase 53 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01750 Seca-Chr12 19385694 19389376 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01750 K01493 - gmx:100792003 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01750 12 19385694 19389376 Seca12g01750 12 19385694 19389376 ECH