Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01741 ATGGCATTGGCAACCATGGGAGACAGTCCTCGGAGCCCAGAAGCGAAGCTGGGGATGCGAGTGGAGGATCTATGGGACGTTCAAGAGGCACAACTAAGTCCTACTGAGAAACTCAACGCTTGTTTTGAAAGCATCCCTGTCTCTGCGTTTCCTTTGGCTCCTTCAAACCAAGAAATTGAAATCAAATCAGACGCTACCTTAGCTGAAGCTGTTAAAATACTTGCACGTCACAACATTCTCAGCGCACCTGTCGTGGATGTTGACGCATCTGAAGATGCTAGTTGGATTGATAGATACATCGGAATAATTGAGTTTGCTGGAATTGTTGTATGGATTTTGCATCAGTCTGAACCTGCATCTCCTAGGAGTCCATCGACTCCTCCATCCAGTGCAAGTGCTATTGCAGCTGCAGCAAACGGAGTGACTTTTGCTCTAGAACTTGAAGCCTTAGGCCTTGGATCTGCTACAACAACTTCAGGAAACTTTTTTGAGGATCTGACTTCTTCTGAACTTTATAAGAATACCAAGGTCCGTGATATTGCAGGAACATTCCGCTGGGCCCCATTTCTTGCTTTAGAGAGATCAAACTCGTTTCTAACTATGCTCTTGCTGCTTTCCAAGTACAAGATGAAGAGTGTTCCTGTGGTAGACTTGGGTGCTGGTAGAATTGATAACATTATTACACAATCTGCAGTGATCCATATGTTGGCAGAATGTGCTGGGGTTCAGTGGTTTGAAAGTTGGGGAACTAAGAAACTATCTGATGTTGGTCTTCCCCTTGTGACATCAAATCATATCATCAAGGTTTATGAGGATGAACCAGTCCTTCAAGCATTTAAACTGATGAGGAAAAAGAGGGTTGGAGGGGTGCCAGTAATGGAAAGAGGTGGCAGCAGGGCAGTTGGTAATATGAGCTTGCGAGATGTTCAATTCTTGCTTACTGCCCCAGAAATCTATCACGATTATAGAGCTATTACAGTAAAGGACTTCCTGACTGCCGTTAGAAGCTACATAGAGAAGAATAAAAATGCATTCCCAATGTCAAGTGAATTCATTACATGCAAAATGGACTGTACAATCAAAGAATTGATTCAAATTCTTGACCAAGAGAAGATTCATAGGGTCTATGTTGTGGATGACGATGGGAATCTGCAAGGACTAATCACACTGAGAGATATCATCTCAAGGCTAGTACATGAGCCACGTGGCTATTTTGGTGATTTCTTTGATGGTGTTCTCCCGTTGCCTGCAAACAGCAGGGTTTAA 1266 0.4344 MALATMGDSPRSPEAKLGMRVEDLWDVQEAQLSPTEKLNACFESIPVSAFPLAPSNQEIEIKSDATLAEAVKILARHNILSAPVVDVDASEDASWIDRYIGIIEFAGIVVWILHQSEPASPRSPSTPPSSASAIAAAANGVTFALELEALGLGSATTTSGNFFEDLTSSELYKNTKVRDIAGTFRWAPFLALERSNSFLTMLLLLSKYKMKSVPVVDLGAGRIDNIITQSAVIHMLAECAGVQWFESWGTKKLSDVGLPLVTSNHIIKVYEDEPVLQAFKLMRKKRVGGVPVMERGGSRAVGNMSLRDVQFLLTAPEIYHDYRAITVKDFLTAVRSYIEKNKNAFPMSSEFITCKMDCTIKELIQILDQEKIHRVYVVDDDGNLQGLITLRDIISRLVHEPRGYFGDFFDGVLPLPANSRV. 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01741 421 Gene3D - 250 400 IPR046342 -
Seca12g01741 421 SUPERFAMILY CBS-domain pair 30 237 IPR046342 -
Seca12g01741 421 ProSiteProfiles CBS domain profile. 261 322 IPR000644 -
Seca12g01741 421 CDD CBS_pair_SF 263 394 - -
Seca12g01741 421 SUPERFAMILY CBS-domain pair 251 407 IPR046342 -
Seca12g01741 421 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 48 397 - -
Seca12g01741 421 Gene3D - 37 241 IPR046342 -
Seca12g01741 421 ProSiteProfiles CBS domain profile. 347 405 IPR000644 -
Seca12g01741 421 ProSiteProfiles CBS domain profile. 54 120 IPR000644 -
Seca12g01741 421 Pfam CBS domain 59 104 IPR000644 -
Seca12g01741 421 Pfam CBS domain 347 398 IPR000644 -
Seca12g01741 421 Pfam CBS domain 265 309 IPR000644 -
Seca12g01741 421 SMART cbs_1 350 398 IPR000644 -
Seca12g01741 421 SMART cbs_1 188 237 IPR000644 -
Seca12g01741 421 SMART cbs_1 57 113 IPR000644 -
Seca12g01741 421 SMART cbs_1 265 314 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01741 Seca-Chr12 19233933 19237855 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01741 - - gmx:100812388 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01741 12 19233933 19237855 Seca12g01741 12 19233933 19237855 ECH
Seca12g01741 12 19233933 19237855 Seca12g01741 12 19233933 19237855 PCT