Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01728 ATGGCGAGAGAAGAAGAGGCATTGGTGTTGTGCAGTGACAAGAGCATGAAAATTGGGGTGACGATTTGGGACATGGAAACGGGAAAAAACCTGCTTCATATACCATCTTGTGCTTCACCTCCTTTCGGCTTGTTATGCTTGAGAAATCGGTTCCTCGTGGCATCGCAAATCAACAAACACGGGTCTGTAGGTGGCGGAGCCGGAGCCATTGTTGTATGGTCATTGAACAAGCCTCAACAACCGCTTTTGAATTACACAGCAGAGGTTGTTGGGCCACTTTCTTGCACAAAAGATGGTATATACCTTGTTGGAGGAGCTTTGTCTGGAAATGCCTATCTTTGGGATGTGACTAGTGGAAAATTGCTGAAAACTTGGAGTGCTCATAATAAATCTCTAAAAAACATGATATTTTCAGATGACGATTCTCTTCTTATTTCTGGTTCGGATGATGGTATGATATGTGTTTGGTCCATGATAAGTCTGTTAGATGCGGAAGAAACGGGAAGCTCGCCTTCTTTATTACATTGTTTGTCGGGGCATATATCCTCCATAACAGGTCTTTTAACTACACCCTGCAGTTACTTCTCAGTTTTAATATCAAGCTCCCTTGATGGTACATGCAAGGTTTGGGACTTCATCACTGGAAGGCTTCTGCAAACTCAAGCTTATCCTTTTGCAATAACTTCCATCACCCTTCACCAATGGGAAAGGCTATTGTTTTGCGGAACAGAAAATGGAACAATAATTGTCAACACACTTGATATTGGTCTGGAAGAAGGTCCTTCAATTATCACAATAGGCCAACCACTTGAATTGAAAGGACACAATGGAGCCATTACTGCCTTGATCTCTAGTCAGACAGGCCTAATATCTGCCTCTGAAGACTGCACGATATGCATCTGGGACGTCATCAAATGGGCAATCATTAGAAGATTCAATCTTCAAAAAGGGAAAGCAACAAATCTTGTGGTAGTTCCGCGCTCCTCGATGCTTTTTGCATCAAACCATAAGAGAGTCACCAATCAGTATTTTGTTTCTCCACTTGACAAGTATCCTCAGCTGATCAACTCATCCAGGGGAACCACCACTCTTCTTTCCTTATGTCGTCTCTACAAAGAAAAGCAAGCTTCCATTGATTTGCGAAGTACTTGTTTATTGAGACAAAACATGTCTAGTTCACAGAAAGCAGATATGCCTATGGCCATGACCATACAAATGAAAGTGGAAACAAGTATAGAGAATCGATTATGGGCAACAAAGATGGCAAAGCATGTCATGGTGATAAACAGACAGTTGCAGTCACGATTGCTGGAGTTGATACAACGCAGGTTGCTTAGTCCAAACAGAGCCAACATTCAAAAAACTAGTAAAAAGAAGCCCAAAATTAAGAGCCTTGGACAAGAGGGAATTCAGAAACCTCAACTTACTCTTTTGTAG 1437 0.4189 MAREEEALVLCSDKSMKIGVTIWDMETGKNLLHIPSCASPPFGLLCLRNRFLVASQINKHGSVGGGAGAIVVWSLNKPQQPLLNYTAEVVGPLSCTKDGIYLVGGALSGNAYLWDVTSGKLLKTWSAHNKSLKNMIFSDDDSLLISGSDDGMICVWSMISLLDAEETGSSPSLLHCLSGHISSITGLLTTPCSYFSVLISSSLDGTCKVWDFITGRLLQTQAYPFAITSITLHQWERLLFCGTENGTIIVNTLDIGLEEGPSIITIGQPLELKGHNGAITALISSQTGLISASEDCTICIWDVIKWAIIRRFNLQKGKATNLVVVPRSSMLFASNHKRVTNQYFVSPLDKYPQLINSSRGTTTLLSLCRLYKEKQASIDLRSTCLLRQNMSSSQKADMPMAMTIQMKVETSIENRLWATKMAKHVMVINRQLQSRLLELIQRRLLSPNRANIQKTSKKKPKIKSLGQEGIQKPQLTLL. 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01728 478 SMART WD40_4 265 302 IPR001680 GO:0005515
Seca12g01728 478 SMART WD40_4 170 211 IPR001680 GO:0005515
Seca12g01728 478 SMART WD40_4 214 252 IPR001680 GO:0005515
Seca12g01728 478 SMART WD40_4 118 157 IPR001680 GO:0005515
Seca12g01728 478 SMART WD40_4 78 115 IPR001680 GO:0005515
Seca12g01728 478 Pfam WD domain, G-beta repeat 271 302 IPR001680 GO:0005515
Seca12g01728 478 Pfam WD domain, G-beta repeat 173 211 IPR001680 GO:0005515
Seca12g01728 478 Pfam WD domain, G-beta repeat 119 157 IPR001680 GO:0005515
Seca12g01728 478 Gene3D - 223 339 IPR015943 GO:0005515
Seca12g01728 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 125 158 IPR001680 GO:0005515
Seca12g01728 478 SUPERFAMILY WD40 repeat-like 19 336 IPR036322 GO:0005515
Seca12g01728 478 PANTHER WD-REPEAT PROTEIN 18 6 440 IPR045227 -
Seca12g01728 478 Gene3D - 2 222 IPR015943 GO:0005515
Seca12g01728 478 PRINTS G protein beta WD-40 repeat signature 144 158 IPR020472 -
Seca12g01728 478 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Seca12g01728 478 PRINTS G protein beta WD-40 repeat signature 289 303 IPR020472 -
Seca12g01728 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 220 IPR001680 GO:0005515
Seca12g01728 478 ProSitePatterns Trp-Asp (WD) repeats signature. 289 303 IPR019775 -
Seca12g01728 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 303 IPR001680 GO:0005515
Seca12g01728 478 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 125 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01728 Seca-Chr12 19032421 19037740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01728 63 248 Miscellaneous Gene Families AT5G08390 26.984 3.98e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01728 K14829 - gmx:102662801 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01728 12 19032421 19037740 Seca12g01728 12 19032421 19037740 ECH