Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01718 ATGGACCTCGGAACCTATGGCTATCCCCCAGCAGGAGTGAAAAAAATTGATTCTAACTATGATGTGCCAGAAGGAGTAGACATTCGGGGAAGATACGATGCAGAGTTTGCAAAAATTCTCACAAGAGATGCTTTGAAATTCGTTGCTGACTTGCAACGTGAGTTCAGAAACCATATCAAGTATGCATTAGAGTGCAGAACAGAAGCAAAAAAGAGATACAATGAAGGGGCTCTACCAGGGTTTGATCCAGCAACTAGGTACATAAGAGAAGGGAATTGGGTGTGTGCACCTGTTCCCCCAGCTGTTTCTGATAGGAAAGTTGAGATCACTGGCCCTGTGGAGAGAAAGATGATCATCAATGCTCTCAACTCAGGAGCTAAAGTCTTTATGGCTGATTTTGAAGATGCACTCTCTCCAAGCTGGGAGAATCTAATGAGAGGCCAAGTGAACTTGAAGGATGCTGTGGCTGGGACTATAACTTTTCATGACAAAGCTAGAAACAGAGCTTACAAACTCAATGATCAGATAGCGAAGCTTTTTGTGCGACCAAGAGGTTGGCACTTACCGGAGGCTCATATTCTGATTGATGGTGAACCTGCAACAGGTTGCCTTGTTGATTTTGGCCTCTACTTCTATCACAATCATTCAACATTCCAGCGTACTCAAGGTGGTGGCTTTGGCCCTTTCTTCTATCTTCCCAAAATGGAGCATTCAAGGGAAGCTAAGATATGGAACAATGTGTTTGAGAGGGCAGAGAAGATGGCAGGCATTGAAAGAGGAAGCATCAGAGCCACTGTTCTGATTGAAACACTTCCTGCAGTGTTTCAAATGGATGAAATTCTGTATGAACTCAGGGACCATTCCGTGGGACTGAACTGTGGGCGTTGGGATTACATTTTCAGTTATGTTAAGACCTTCCAGGCTCACCCAAATCGCTTGTTACCAGATAGGGTCCAAGTTGGCATGACTCAACACTTCATGAAGAGTTACTCTGATCTTCTCATCAGGACATGCCATAAGCGTGGTGTGCATGCTATGGGAGGAATGGCAGCACAAATTCCAATTAGAGACGATCCTGTGGCTAACGAGGCAGCACTTGAACTTGTAAGGAAAGACAAGCTTAGAGAAGTGAAAGCAGGGCATGATGGAACTTGGGCTGCACACCCTGGTCTAATTCCAGCTTGTATGGAGGTTTTCAACAACAACATGGGGAATGCTCCTGATCAGATAGGGACAATGAAACGTGATGATGCTGCAAACATAACTGAAGAAGATCTCTTGCAGATACCTAGAGGAGCTCGTACTATGGAAGGTCTTCGCTTGAATACTCGTGTGGGGATTCAGTATGTGGCAGCATGGCTCACTGGAACTGGTTCAGTGCCTCTTTACAACCTCATGGAAGATGCTGCTACTGCTGAGATTAGCAGGGTGCAGAACTGGCAGTGGTTAAAGTATGGAGTGGAATTGGATGGTGATGGGCTTGGAGTTAAGGTGAACAGAGAACTTTTTGGTAGAGTTGTTGAAGAGGAGATGGCTAGGATTGAAAATGAGGTGGGGAAAGAGAAGTTCAAGAAGGGAATGTACAAGGAGGCTTACAAGATCTTCACCAGGCAATGTACATCCCCAACATTAGATGATTTTCTGACTCTAGATGCCTATAATCATATAGTCATATATCACCCCAGGGAAACATCAAAGCTTTGA 1704 0.4472 MDLGTYGYPPAGVKKIDSNYDVPEGVDIRGRYDAEFAKILTRDALKFVADLQREFRNHIKYALECRTEAKKRYNEGALPGFDPATRYIREGNWVCAPVPPAVSDRKVEITGPVERKMIINALNSGAKVFMADFEDALSPSWENLMRGQVNLKDAVAGTITFHDKARNRAYKLNDQIAKLFVRPRGWHLPEAHILIDGEPATGCLVDFGLYFYHNHSTFQRTQGGGFGPFFYLPKMEHSREAKIWNNVFERAEKMAGIERGSIRATVLIETLPAVFQMDEILYELRDHSVGLNCGRWDYIFSYVKTFQAHPNRLLPDRVQVGMTQHFMKSYSDLLIRTCHKRGVHAMGGMAAQIPIRDDPVANEAALELVRKDKLREVKAGHDGTWAAHPGLIPACMEVFNNNMGNAPDQIGTMKRDDAANITEEDLLQIPRGARTMEGLRLNTRVGIQYVAAWLTGTGSVPLYNLMEDAATAEISRVQNWQWLKYGVELDGDGLGVKVNRELFGRVVEEEMARIENEVGKEKFKKGMYKEAYKIFTRQCTSPTLDDFLTLDAYNHIVIYHPRETSKL. 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01718 567 Gene3D Malate synthase, domain 3 22 432 IPR046363 -
Seca12g01718 567 Gene3D Malate synthase, domain III 433 557 IPR044856 -
Seca12g01718 567 PANTHER MALATE SYNTHASE 20 562 IPR006252 GO:0004474|GO:0006097
Seca12g01718 567 Pfam Malate synthase 27 557 IPR001465 GO:0004474|GO:0006097
Seca12g01718 567 FunFam Malate synthase 22 432 - -
Seca12g01718 567 FunFam Malate synthase 433 557 - -
Seca12g01718 567 ProSitePatterns Malate synthase signature. 285 300 IPR019830 GO:0004474|GO:0006097
Seca12g01718 567 SUPERFAMILY Malate synthase G 22 557 IPR011076 GO:0003824
Seca12g01718 567 PIRSF Malate_synth 17 558 IPR006252 GO:0004474|GO:0006097
Seca12g01718 567 NCBIfam malate synthase A 39 556 IPR006252 GO:0004474|GO:0006097
Seca12g01718 567 CDD malate_synt_A 39 557 IPR006252 GO:0004474|GO:0006097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01718 Seca-Chr12 18873270 18875780 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01718 K01638 - gmx:732628 1069.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01718 12 18873270 18875780 Seca12g01718 12 18873270 18875780 ECH