Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01685 ATGGAAGGAGAAGAGGGATCTCAGCAGCCACAGCTCGTCCTCGCCGACAAGCTATTCCTCCTACGACAACCCGATATTCAAGACATTGACAAGGTTCGATTCAAAGAGGATGTTTTCAATCATGTCAAGGATAATGATATGGTCCCTTTATACGAAACCCTAGTCGCTGATTCCGTATTGGACATGGATCGTGCCCTTTTGGACTCCATGCGTGCTAAAATTGACGACGAACTCAAGAAGCTTGACGAAAAGATTGCTGATGCTGAGGAAAACTTAGGTGAGAGTGAAGTTCGTGAGGCTCACTTGGCAAAATCCTTGTTTTTCATCCGGATTGGGGACAAGGAGAAAGCCTTGGAACATCTCAAGATAACAGAAACCAAAACAGTTGCAGTTGGACAGAAGATGGACCTGGTGTTTCATACATTGCAGCTTGGTTTCTTTGACATGGATTTTGATCTCATTTCCAAAAGCATTGACAAAGCTAAAAACTTGTTTGAAGAAGGTGGTGATTGGGAAAGGAAAAATCGGCTGAAAGTGTATGAGGGCCTGTACTGCATGTCCACTCGAAATTTCAAGAAGGCTGCTAAATTGTTTTTGGATTCTATTTCCACCTTTACAACCTATGAGCTTTTCCCCTATGACACCTTTATATTTTACACAGTTTTGACAAGCATTATATCATTGGATAGAGTTTCCTTGAAGCAAAAGGTAGTGGATGCTCCTGAGATCTTGACAGTGATTGGCAAAATCCCATATCTTTCAGAGTTCTTGAACTCCTTATATGATTGTCAGTACAAGCCTTTTTTCTCAGCATTTGCTGGCCTGACTGAGCAAATTAAGTTGGACCGCTATCTGCACCCACACTTCCGATATTACATGAGGGAGGTCAGGACTGTTGTTTATTCCCAATTTTTGGAATCTTACAAGAGTGTAACAATTGAAGCCATGGCAAAAGCCTTTGGAGTGACAGTGGATTTCATTGATCTGGAGCTATCACGTTTTATAGCAGCAGGCAAACTTCATTGTAAGATTGATAAAGTTGCAGGCGTTCTGGAAACCAATCGCCCTGATGCTAAGAATGCTCTTTACCAAGCAACTATTAAGCAAGGGGACTTCCTATTGAACCGGATCCAGAAATTGTCACGTGTGATTGATCTTTAG 1161 0.4195 MEGEEGSQQPQLVLADKLFLLRQPDIQDIDKVRFKEDVFNHVKDNDMVPLYETLVADSVLDMDRALLDSMRAKIDDELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKEKALEHLKITETKTVAVGQKMDLVFHTLQLGFFDMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAAKLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKPFFSAFAGLTEQIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01685 386 PANTHER 26S PROTESOME SUBUNIT 6 10 386 IPR019585 -
Seca12g01685 386 FunFam 26S proteasome regulatory subunit N7 11 337 - -
Seca12g01685 386 Coils Coil 67 98 - -
Seca12g01685 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 287 370 IPR000717 -
Seca12g01685 386 Pfam PCI domain 254 354 IPR000717 -
Seca12g01685 386 SUPERFAMILY "Winged helix" DNA-binding domain 282 363 IPR036390 -
Seca12g01685 386 Pfam 26S proteasome subunit RPN7 63 236 IPR045135 -
Seca12g01685 386 Gene3D - 24 337 - -
Seca12g01685 386 ProSiteProfiles PCI domain profile. 190 358 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01685 Seca-Chr12 18356360 18360729 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01685 K03037 - gmx:100810692 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01685 12 18356360 18360729 Seca12g01685 12 18356360 18360729 ECH