Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01636 ATGGACTTCGACTTCAGGGCTAGTATTCATTCTGTCAAGCACCTCTCTGCTGTTCAAGCTGCTCGACTTCACTCTGATAATTATTCAGTGATCCATTACACAGATGTGGATAATGATGGCCGATATGATTTCCGATGTCCTTTCTGTGATTTTGAAATTGAAGTTCCTGTGCTCTGCAGCAATTTGGAAGAGGAGCATTGCTCTGCCCTAAAAAACGTGGTTTGTCCTGTGTGTGAAGAAAATTTAGGGAAGGATGCAATCACACAATTTACACATTCAAGCTCACGAACGTGGGCGTGGAAATCTGAAAAATCTAGCATCTGGTCTGGTTCAGCAATGCTTGGCAAGAAACTAGTTGCCAGGGGAAACAAACAAGAATTAATACCTGATCCGCTTTTGTCACCATTTATCTGCAACGTTCCCATTCCAAACCCTAACAATAACCATCCAGATGAAAAGTCCAGCTCCAGCAACAAGGATATAGACTTTCATAATGCAGAAAGGTCTGCGACTGATGCTCCAGATGTGGGTGTTGTGCAGGATCAACAAGAGAGAAGGCTGAGGGCAGAATTTGTTCAAGAGTTGGTATTATCAACCATATTCGAGTAG 609 0.4286 MDFDFRASIHSVKHLSAVQAARLHSDNYSVIHYTDVDNDGRYDFRCPFCDFEIEVPVLCSNLEEEHCSALKNVVCPVCEENLGKDAITQFTHSSSRTWAWKSEKSSIWSGSAMLGKKLVARGNKQELIPDPLLSPFICNVPIPNPNNNHPDEKSSSSNKDIDFHNAERSATDAPDVGVVQDQQERRLRAEFVQELVLSTIFE. 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01636 202 PANTHER PROTEIN DEHYDRATION-INDUCED 19 34 201 IPR033347 -
Seca12g01636 202 Pfam Stress-induced protein Di19, C-terminal 123 200 IPR027935 -
Seca12g01636 202 Pfam Drought induced 19 protein (Di19), zinc-binding 43 92 IPR008598 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01636 Seca-Chr12 17663033 17667792 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01636 - - vun:114175178 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01636 12 17663033 17667792 Seca12g01636 12 17663033 17667792 ECH
Seca12g01636 12 17663033 17667792 Seca4g02973 4 50838922 50842857 PCT