Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01632 ATGGAGTCTACTCTAGTGATCAAGGTGAAATATGGAGATACCCTCAGGCGCTTTAGTGCTCGTGTGGATGAGAACAATCGATTGGATCTTAACATGGTTGGGTTGAGGGCCAAGATATGTTCTATTTTCAATTTCACTGCTGATGCAAATTTCACTCTGAGATATGTAGATGAAGATGGTGACTTGGTGACTCTTGTGGATGATGATGATTTGCATGATGTCATGAGGCAGCAATTGAAATTCTTGAAGATTGATGTGCATATGATCAATGACAGTGGTGGTAAATCAAATGTTGGGTCTGGTGGAAGTGCCACCCCTTTAAGATCTCCTGTCTCAACCCCGAATCTGGAAGAGATTTTTACTAAATCTGATGTTTTGAATTCTCTGCCAGAGCCTTTTCGTGAGCTTCTTTATTCATCAATTTCAAAAGCTGCATCTTCAAGTCCAGTGCTGGCTAATCTTGCTGATTCAATTTCCAAAATTGGACAGTCCATTCTAAATTCTCATAGCCAGCCTCATGTCGCAGCTGGAACAAGCTCAAGAAATAGTGTTCCTGAAGAACCTATCACTTCTGAAGCTAGAGGTCCACAGTCTCCATGTGTAGACTCAGCTTCCAATGCCAGTGGACATCCTTTCCCAGGCCCATTTCTGAATGGAAATATCATTAAATCTGATGTTCTGTATTCAGTACCAGAGCCAGTACGTGAGGCTCTTTCTAATTTATCACTTTCAAAAGCTGCATCTTCAAGTGAAGTGCATGCTAATCATGCTGATTCAACCTCTAAAATGGGACAATCCGCTCTAAATTCTCATTGCCAGCCTCATGTTGCAGCTGATCCAAACTCAAAAACTGGAGTTCCTGAAGAACCTATCATTTCTGAAGCAGGAGGGCCACAGTCTCCATATGTGTACTCAGCTTCCAATGCCAGTCGACAGGTGGAGGCTGGAAACATAATTAGAGATGGGAACATAGATAGAAGGGGTGTACTTAGAGGTAAAATGGAGTCAGCTTCCAGTGCCAGTGGACAGGTGGACACAAGAAACAGATATAATTTAATAGTGACAAGATATGCTCCTGCCCCTGTTGATCTCAATTCCCCTCCATGTGATCCGTATTTATCCCAGTCCACTAATGTAAATAGCACACCACTTTCATCAGCAGTCCCTGCTGGTGATGGCAACAAGGGAAAAATGTCTACTGATGATAGTTTTGGTAAGGGTGAAAGTTGTGGGACATCTACAAGTTCTGCAGCTCCTAATAACAGCCCAAGTCAGACTACTGCTTTGAGTTCTGGTCCTCCCATTGACTATCCATTTTCTAGGACATATACTTTTCGTTCAGTGCCACCTCCTCCTCTAGGAAATTGTCGGATTCCTTCATATAAAAGGAGCCACAGTCACACTGAGGCGATGAGTGGTATGTTCCACAAGGGGGTCCGCTGTGATGGCTGTGGAGTCTATCCAATAACTGGACCTCGTTTCAAATCTAAAATGTAA 1497 0.4309 MESTLVIKVKYGDTLRRFSARVDENNRLDLNMVGLRAKICSIFNFTADANFTLRYVDEDGDLVTLVDDDDLHDVMRQQLKFLKIDVHMINDSGGKSNVGSGGSATPLRSPVSTPNLEEIFTKSDVLNSLPEPFRELLYSSISKAASSSPVLANLADSISKIGQSILNSHSQPHVAAGTSSRNSVPEEPITSEARGPQSPCVDSASNASGHPFPGPFLNGNIIKSDVLYSVPEPVREALSNLSLSKAASSSEVHANHADSTSKMGQSALNSHCQPHVAADPNSKTGVPEEPIISEAGGPQSPYVYSASNASRQVEAGNIIRDGNIDRRGVLRGKMESASSASGQVDTRNRYNLIVTRYAPAPVDLNSPPCDPYLSQSTNVNSTPLSSAVPAGDGNKGKMSTDDSFGKGESCGTSTSSAAPNNSPSQTTALSSGPPIDYPFSRTYTFRSVPPPPLGNCRIPSYKRSHSHTEAMSGMFHKGVRCDGCGVYPITGPRFKSKM. 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01632 498 MobiDBLite consensus disorder prediction 246 277 - -
Seca12g01632 498 SUPERFAMILY CAD & PB1 domains 4 80 - -
Seca12g01632 498 ProSiteProfiles PB1 domain profile. 4 86 IPR000270 GO:0005515
Seca12g01632 498 MobiDBLite consensus disorder prediction 246 299 - -
Seca12g01632 498 MobiDBLite consensus disorder prediction 170 187 - -
Seca12g01632 498 Gene3D - 467 498 IPR043145 -
Seca12g01632 498 SMART PB1_new 4 89 IPR000270 GO:0005515
Seca12g01632 498 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 1 497 - -
Seca12g01632 498 MobiDBLite consensus disorder prediction 369 388 - -
Seca12g01632 498 MobiDBLite consensus disorder prediction 364 434 - -
Seca12g01632 498 MobiDBLite consensus disorder prediction 170 207 - -
Seca12g01632 498 Pfam PB1 domain 5 77 IPR000270 GO:0005515
Seca12g01632 498 SUPERFAMILY RING/U-box 471 496 - -
Seca12g01632 498 Gene3D - 1 88 - -
Seca12g01632 498 MobiDBLite consensus disorder prediction 405 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01632 Seca-Chr12 17617301 17621860 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01632 K17987 - gmx:100778692 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01632 12 17617301 17621860 Seca12g01632 12 17617301 17621860 ECH