Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01620 ATGGCAACTTTACTTGCAATTCTAAAATTGCTGATTATTTTCATATGGGCAGCTTGGGTTTCTCTTTGGCTGCTGAAGCCAACCCAAGTCTGGACAAAAAATTGGAAACATGCAGAAGAAAGCGCTAGTAACACAATTTTTGGATACTATGGTCTTAACTTTGCTGTGTATACATTTCCCATAATTGCTGTTGCCATAATTGGACTTCTTTTCTTGGATTTGAAAGGGAGATATCAAAGAAGCAGAAGTGCAAGGAGTTCATCAATTATCTTCTCAAATCCACTGGTGGTGAACAGTCTACTGGGGATCTTATCCAGTGTTGAAATACTGGTTGCTTTCCTTTTTATCATCTTCTTAGCATGGACTTATTACTCTCGTATTTCTAATGACTTCAAAAGGTTGATGCCAGACAAATCACTCAAGTTGAACATATGGGAACTCAAGTATCTCAGAATAGCAACCCGGTTTGGCTTGCTTGCAGAAGCCTGTCTGGCTTTGCTTCTTCTTCCTATTTTAAGGGGGTTAGCTATATTTCGCATACTTGGCATTCAATTTGAAGCTTCAGTTAGGTATCACATATGGATTGGAACTGCTATGATACTTTTTGCTTCAATACATGGGGCAAGCACTTTGTTTGTCTGGGGTATTAGCCACTATATACAGCATGAGATTTGGAAGTGGCAAAAGACAGGACGTATATACCTTGCTGGGGAGATTACACTCATTATTGGGCTAGTTATGTGGGTCACTTCACTTCCCCAAATTAGAAGGAGAAAGTTTGAAATCTTCTACTACACACATCATCTGTATGCAGTCTTTCTAGTATTTTTCTTGTTTCATGCTGGGGATAGGCACTTCTATACTGTCTTCCCAGGAATATTCCTATTTAGCCTTGACAAACTGCTGCGTATAATACAATCAAGTCCAAAAACTTGCATGGTTTCAGCTAGAATTTTACCCTGCAATGCTGTGGAGCTAATTCTGCCCAAAGATCCAAGGCTGAAGTATAACCCTACAAGTGTTATATTTTTGAAGATACCAACCATATCTCATCTTCAATGGCATTCATTCAGTATAATATCTAGTTCCAAGGCTGATGAACATATTATGTCTGTGATAATTAAATGTCAAGGGTGGTGGACAAATACTGTTTATGACCTGGTACATGCTGAATTAAACAAAGGTGCTGATAAGAGGAAGGGTTTATATGTTGCAATCGAAGGACCTTATGGACCTGCTTCATTAGACTTTTTAAGATCATATGACAGCCTAATTATGGTTGCTGGAGGAAGTGGAATAACCCCATTTCTGAGCATTTTGGCAGAAGTTGATGCAGCTACCAGCAAAAATAGATTTCCCTCAAGAATACAACTTGTATATGTCATAAAGAAGGAACATGACTTCTGTCTGTTACATTCAATCTCACATCTGTTACTCAACCAATCAACTGAGAAATTTCATTTGAATCTAAAATTGTTTGTAACCCAAGAAACACAAGCACAGGTGGGAATTAACGAGCTTCTAAATGAGTTCTCTAAAGTAAGAACCCTGCAAATGAACAGTGTGTGTTCAAATTATGCAGCATTCGGGCCTGAAAGTCCTATTTGGATGGCTTCCATTACGGGATTTTGCTCCATCATTTTCCTTATTTTTATTATCTGTTTCAATCATCTTATAATTCCATCTGGAAAGCGCTCCAGATCGTCAAAAGATAAGACTCCCTCTTGGATTGTGGATCTACTTCTAATAGCTGCCTTTGTCCTAGCTTTAGCTTGCAGCACCTTGATAGCAGTTATCTTGAGATGGAGAAGGCTGAAGAAAGGGATTCAACCAATTTCGCAGAAGGAAATTGAGCCCCTTGATCTAAGTTCAGCTGAAACTAGGAATGCTCTTGAAGAACATGAAGTTCATTTTGGAGGAAGGCCTAACTTTAAAGATATATTTGGCCAGTTCCGGAATGAAACCTGTGGGTCTAATATTGGAGTTCTGGTTTGTGGACCTGAGAGCATGAAGGAATCAGTGGCATCCGCATGCCAGCAGAAGTCTGAGTGTATCAAGTTAGGTGTAAAAGGAACAGAGCCCCACTTCACTTTCCACTCTCTCAACTTCACGCTTTAG 2118 0.3933 MATLLAILKLLIIFIWAAWVSLWLLKPTQVWTKNWKHAEESASNTIFGYYGLNFAVYTFPIIAVAIIGLLFLDLKGRYQRSRSARSSSIIFSNPLVVNSLLGILSSVEILVAFLFIIFLAWTYYSRISNDFKRLMPDKSLKLNIWELKYLRIATRFGLLAEACLALLLLPILRGLAIFRILGIQFEASVRYHIWIGTAMILFASIHGASTLFVWGISHYIQHEIWKWQKTGRIYLAGEITLIIGLVMWVTSLPQIRRRKFEIFYYTHHLYAVFLVFFLFHAGDRHFYTVFPGIFLFSLDKLLRIIQSSPKTCMVSARILPCNAVELILPKDPRLKYNPTSVIFLKIPTISHLQWHSFSIISSSKADEHIMSVIIKCQGWWTNTVYDLVHAELNKGADKRKGLYVAIEGPYGPASLDFLRSYDSLIMVAGGSGITPFLSILAEVDAATSKNRFPSRIQLVYVIKKEHDFCLLHSISHLLLNQSTEKFHLNLKLFVTQETQAQVGINELLNEFSKVRTLQMNSVCSNYAAFGPESPIWMASITGFCSIIFLIFIICFNHLIIPSGKRSRSSKDKTPSWIVDLLLIAAFVLALACSTLIAVILRWRRLKKGIQPISQKEIEPLDLSSAETRNALEEHEVHFGGRPNFKDIFGQFRNETCGSNIGVLVCGPESMKESVASACQQKSECIKLGVKGTEPHFTFHSLNFTL. 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01620 705 PANTHER NADPH OXIDASE 30 703 - -
Seca12g01620 705 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 291 416 IPR017927 GO:0016491
Seca12g01620 705 Pfam Ferric reductase NAD binding domain 421 679 IPR013121 GO:0016491
Seca12g01620 705 SFLD Ferric Reductase Domain 28 703 - -
Seca12g01620 705 Gene3D - 602 703 IPR039261 -
Seca12g01620 705 Gene3D - 404 534 IPR039261 -
Seca12g01620 705 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 404 503 IPR039261 -
Seca12g01620 705 SFLD Ferric reductase subgroup (FRE) 5 700 - -
Seca12g01620 705 SUPERFAMILY Riboflavin synthase domain-like 314 413 IPR017938 -
Seca12g01620 705 CDD NOX_Duox_like_FAD_NADP 314 468 - -
Seca12g01620 705 Pfam FAD-binding domain 314 414 IPR013112 GO:0016491
Seca12g01620 705 Pfam Ferric reductase like transmembrane component 157 277 IPR013130 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01620 Seca-Chr12 17513023 17516174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01620 177 705 Miscellaneous Gene Families AT5G50160 47.576 5.81e-176 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01620 K00521 - gmx:100816560 1140.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01620 12 17513023 17516174 Seca12g01620 12 17513023 17516174 ECH